Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013299.1 Corchorus olitorius cultivar O-4 contig13332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109649
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:2238 original size:916 final size:913
Alignment explanation
Indices: 3--2395 Score: 4373
Period size: 911 Copynumber: 2.6 Consensus size: 913
1 TA
3 CTTTTTTTNTTTTACTAAA-TG-TATTTTCTCTTTCTTTTTAC-TTTTCTGTACGTTTAATGTTA
1 CTTTTTTT-TTTT-CTAAATTGAT-TTTTCTC-TTCTTTTTACTTTTTCT-TACGTTTAATGTTA
65 TCATTAAGAATCTAAGTTTTAACAAGAAGCATGCTCGCGTCTTTGCTGTAGGTGAGGTAGATTTA
61 TCATTAAGAATC-AAGTTTTAACAAGAAGCATGCTCGCG-CTTTGCTGTAGGTGAGG-AGATTTA
* * *
130 TCTAAATACTAGTATATATTTCCTTTGAATTTATATTAATCTTCATATAAGTGTAAATATTTGTT
123 TCTAAATACTAGTATATATTTCCTTTGAATTTATGTTAATCTTCATATGAGTGTAAACATTTGTT
* *
195 GACATGATTCGCTATACATGGTTGTTTTATATTTGGGGGAGTTATACAGAGTTGAGTTTAGGATC
188 GACATAATTGGCTATACATGGTTGTTTTATATTTGGGGGAGTTATACAGAGTTGAGTTTAGGATC
*
260 TAGTAGCTCTTCACAAAAACTCTTTAGTAAAGCTTACAGAAGATGGATACTTTAAACTTTCATAT
253 TAGTAGCTCTTCACAAAAACTCTTCAGTAAAGCTTACAGAAGATGGATACTTTAAACTTTCATAT
* * *
325 CTAAGTTAGTATTTACAAAGATTCATAAATTTTATGGCTTTATCCAAATTTAAATTTACACATTA
318 CTAAGTTAGTATTTACAAAGATTCATACATTTTATGGCTTTATCCAGATATAAATTTACACATTA
* *
390 TTTTCAATAAATTATCTCAATATGGTGCATGAAGGATTCATAAATTGAATGTATTGATTGGAGGT
383 TTTTCAATAAATTATCTCAATATGGCGCATGAAGGATTCAAAAATTGAATGTATTGATTGGAGGT
455 CACCTGGATAGAACATGTGGAAGTAGATGACCAAAAAAACACTCATCATCTATCCAGACCTCATA
448 CACCTGGATAGAACATGTGGAAGTAGATGACCAAAAAAACACTCATCATCTATCCAGACCTCATA
*
520 TGTCGTAATTCAGCATAGGGATCTAAACATTGGGTTATTACTCTTCAAATGATGTATAATCAACT
513 TGTCGTAATTCAGCATAGGGATCTAAACATTGGGTTATTACTCTTCAAATAATGTATAATCAACT
585 TTTTATTATGGAATAAAAAAAGCTCTTTAAATTAATATTTTATTAATTTATCGATTAATTAATAA
578 TTTTATTATGGAATAAAAAAAGCTCTTTAAATTAATATTTTATTAATTTATCGATTAATTAATAA
650 CTCTCTAAGTTAATAAATTTTCAGGGTCCCAACATTATTAATTTATAGAAGTTTTACTGCCACAA
643 CTCTCTAAGTTAATAAATTTTCAGGGTCCCAACATTATTAATTTATAGAAGTTTTACTGCCACAA
715 AACCAAACTAAGTCTTTGGAATTGATTGCTTATCTTTCTCTTGTTCTCTTTGGAGAGAATTTTAT
708 AACCAAACTAAGTCTTTGGAATTGATTGCTTATCTTTCTCTTGTTCTCTTTGGAGAGAATTTTAT
* *
780 TCTTCTCTACCTAATAAAATTTGTTTTTGAAAAAAAAATATGAAGTCCCAATTGAAAGCCTGAAT
773 TCTTCTCTACCTAATAAAATTTGTTTTTGAAAAAAAAATATAAAATCCCAATTGAAAGCCTGAAT
845 CTAAATTAACAACATAAAAATAAAAAGAAATTGTAAATTACAGCCATAATATAATAATTCTAATG
838 CTAAATTAACAACATAAAAATAAAAAGAAATTGTAAATTACAGCCATAATATAATAATTCTAATG
910 TAGCTAAAACT
903 TAGCTAAAACT
*
921 C--TTTTTTTTTCTAAATTGATTTTTCTCTTCTTTTTACTTTTTCTTACGTTTAATTTTATCATT
1 CTTTTTTTTTTTCTAAATTGATTTTTCTCTTCTTTTTACTTTTTCTTACGTTTAATGTTATCATT
*
984 AAGAATCAAGTTTTAACAAGAAGCATGCTCGCGCTTCGCTGTAGGTGAGGAGATTTATCTAAATA
66 AAGAATCAAGTTTTAACAAGAAGCATGCTCGCGCTTTGCTGTAGGTGAGGAGATTTATCTAAATA
**
1049 GAAGTATATATTTCCTTTGAATTTATGTTAATCTTCATATGAGTGTAAACATTTGTTGACATAAT
131 CTAGTATATATTTCCTTTGAATTTATGTTAATCTTCATATGAGTGTAAACATTTGTTGACATAAT
*
1114 TGGCTATACATAGTTGTTTTATATTTGGGGGAGTTATACAGAGTTGAGTTTAGGATCTAGTAGCT
196 TGGCTATACATGGTTGTTTTATATTTGGGGGAGTTATACAGAGTTGAGTTTAGGATCTAGTAGCT
1179 CTTCACAAAAACTCTTCAGTAAAGCTTACAGAAGATGGATACTTTAAACTTTCATATCTAAGTTA
261 CTTCACAAAAACTCTTCAGTAAAGCTTACAGAAGATGGATACTTTAAACTTTCATATCTAAGTTA
1244 GTATTTACAAAGATTCATACATTTTATGGCTTTATCCAGATATAAATTTACACATTATTTTCAAT
326 GTATTTACAAAGATTCATACATTTTATGGCTTTATCCAGATATAAATTTACACATTATTTTCAAT
* * *
1309 AAATTATCTCAATATGGCGCATGAAGGATTCAGAAATTGAATGCATTGATTGGAGGTCACCTAGA
391 AAATTATCTCAATATGGCGCATGAAGGATTCAAAAATTGAATGTATTGATTGGAGGTCACCTGGA
1374 TAGAACATGTGGAAGTAGATGACCAAAAAAACACTCATCATCTATCCAGACCTCATATGTCGTAA
456 TAGAACATGTGGAAGTAGATGACCAAAAAAACACTCATCATCTATCCAGACCTCATATGTCGTAA
1439 TTCAGCATAGGGATCTAAACATTGGGTTATTACTCTTCAAATAATGTATAATCAACTTTTTATTA
521 TTCAGCATAGGGATCTAAACATTGGGTTATTACTCTTCAAATAATGTATAATCAACTTTTTATTA
1504 TGGAATAAAAAAAGCTCTTTAAATTAATATTTTATTAATTTATCGATTAATTAATAACTCTCTAA
586 TGGAATAAAAAAAGCTCTTTAAATTAATATTTTATTAATTTATCGATTAATTAATAACTCTCTAA
* *
1569 GTTAATAAATTTTCATGGTTCCAACATTATTAATTTATAGAAGTTTTACTGCCACAAAACCAAAC
651 GTTAATAAATTTTCAGGGTCCCAACATTATTAATTTATAGAAGTTTTACTGCCACAAAACCAAAC
*
1634 TAATTCTTTGGAATTGATTGCTTATCTTTCTCTTGTTCTCTTTGGAGAGAATTTTATTCTTCTCT
716 TAAGTCTTTGGAATTGATTGCTTATCTTTCTCTTGTTCTCTTTGGAGAGAATTTTATTCTTCTCT
1699 ACCTAATAAAATTTGTTTTTGAAAAAAAAAATATAAAATCCCAATTGAAAGCCTGAATCTAAATT
781 ACCTAATAAAATTTGTTTTTG-AAAAAAAAATATAAAATCCCAATTGAAAGCCTGAATCTAAATT
*
1764 AACAACATAAAAATAAAAAGAAATTGTAAATTACGGCCATAATATAATAATATTCTAATGTAGCT
845 AACAACATAAAAATAAAAAGAAATTGTAAATTACAGCCATAATATAAT-A-ATTCTAATGTAGCT
1829 AAAACT
908 AAAACT
*
1835 CTTTTTTTTTTTCTAAATTGATTTTTCTCTTCTTTTTACTTTTTCTTGCGTTTAATGTTATCATT
1 CTTTTTTTTTTTCTAAATTGATTTTTCTCTTCTTTTTACTTTTTCTTACGTTTAATGTTATCATT
1900 AAGAATCAAGTTTTAACAAGAAGCATGCTCGCGCTTTGCTGTAGGTGAGGAGATTTATCTAAATA
66 AAGAATCAAGTTTTAACAAGAAGCATGCTCGCGCTTTGCTGTAGGTGAGGAGATTTATCTAAATA
1965 CTAGTATATATTTCCTTTGAATTTATGTTAATCTTCATATGAGTGTAAACATTTGTTGACATAAT
131 CTAGTATATATTTCCTTTGAATTTATGTTAATCTTCATATGAGTGTAAACATTTGTTGACATAAT
*
2030 TGGCTATACATGGTTGTTTTATATTTGGGGGTGTTATACAGAGTTGAGTTTAGGATCTAGTAGCT
196 TGGCTATACATGGTTGTTTTATATTTGGGGGAGTTATACAGAGTTGAGTTTAGGATCTAGTAGCT
*
2095 CTTCACAAAAACTCTTCAGTAAATCTTACAGAAGATGGATACTTTAAACTTTCATATCTAAGTTA
261 CTTCACAAAAACTCTTCAGTAAAGCTTACAGAAGATGGATACTTTAAACTTTCATATCTAAGTTA
2160 GTATTTACAAAGATTCATACATTTTATGGCTTTATCCAGATATAAATTTACACATTATTTTCAAT
326 GTATTTACAAAGATTCATACATTTTATGGCTTTATCCAGATATAAATTTACACATTATTTTCAAT
*
2225 GAATTATCTCAATATGGCGCATGAAGGATTCAAAAATTGAATGTATTGATTGGAGGTCACCTGGA
391 AAATTATCTCAATATGGCGCATGAAGGATTCAAAAATTGAATGTATTGATTGGAGGTCACCTGGA
2290 TAGAACATGTGGAAGTAGATGACCAAAAAAACACTCATCATCTATCCAGACCTCATATGTCGTAA
456 TAGAACATGTGGAAGTAGATGACCAAAAAAACACTCATCATCTATCCAGACCTCATATGTCGTAA
*
2355 TTCAGCATAGGGATCTAAACGTTGGGTTATTACTCTTCAAA
521 TTCAGCATAGGGATCTAAACATTGGGTTATTACTCTTCAAA
2396 CGATGTGTGA
Statistics
Matches: 1429, Mismatches: 38, Indels: 18
0.96 0.03 0.01
Matches are distributed among these distances:
911 666 0.47
912 104 0.07
913 27 0.02
914 61 0.04
915 19 0.01
916 551 0.39
918 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (913 bp):
CTTTTTTTTTTTCTAAATTGATTTTTCTCTTCTTTTTACTTTTTCTTACGTTTAATGTTATCATT
AAGAATCAAGTTTTAACAAGAAGCATGCTCGCGCTTTGCTGTAGGTGAGGAGATTTATCTAAATA
CTAGTATATATTTCCTTTGAATTTATGTTAATCTTCATATGAGTGTAAACATTTGTTGACATAAT
TGGCTATACATGGTTGTTTTATATTTGGGGGAGTTATACAGAGTTGAGTTTAGGATCTAGTAGCT
CTTCACAAAAACTCTTCAGTAAAGCTTACAGAAGATGGATACTTTAAACTTTCATATCTAAGTTA
GTATTTACAAAGATTCATACATTTTATGGCTTTATCCAGATATAAATTTACACATTATTTTCAAT
AAATTATCTCAATATGGCGCATGAAGGATTCAAAAATTGAATGTATTGATTGGAGGTCACCTGGA
TAGAACATGTGGAAGTAGATGACCAAAAAAACACTCATCATCTATCCAGACCTCATATGTCGTAA
TTCAGCATAGGGATCTAAACATTGGGTTATTACTCTTCAAATAATGTATAATCAACTTTTTATTA
TGGAATAAAAAAAGCTCTTTAAATTAATATTTTATTAATTTATCGATTAATTAATAACTCTCTAA
GTTAATAAATTTTCAGGGTCCCAACATTATTAATTTATAGAAGTTTTACTGCCACAAAACCAAAC
TAAGTCTTTGGAATTGATTGCTTATCTTTCTCTTGTTCTCTTTGGAGAGAATTTTATTCTTCTCT
ACCTAATAAAATTTGTTTTTGAAAAAAAAATATAAAATCCCAATTGAAAGCCTGAATCTAAATTA
ACAACATAAAAATAAAAAGAAATTGTAAATTACAGCCATAATATAATAATTCTAATGTAGCTAAA
ACT
Found at i:5689 original size:15 final size:15
Alignment explanation
Indices: 5671--5701 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
5661 CAAGGGCTGA
*
5671 AATTAATTAATTATT
1 AATTAAATAATTATT
5686 AATTAAATAATTATT
1 AATTAAATAATTATT
5701 A
1 A
5702 TTTTATTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AATTAAATAATTATT
Found at i:5696 original size:19 final size:18
Alignment explanation
Indices: 5674--5724 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 18
5664 GGGCTGAAAT
5674 TAATTAATTATTAATTAAA
1 TAATT-ATTATTAATTAAA
* *
5693 TAATTATTATTTTATTGAA
1 TAATTATTA-TTAATTAAA
5712 TAATTATTATTAA
1 TAATTATTATTAA
5725 AAATTCCACA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TAATTATTATTAATTAAA
Found at i:18070 original size:20 final size:20
Alignment explanation
Indices: 18042--18082 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
18032 AAATAGCGGT
18042 GTTTCCGTAC-AACAAACGCC
1 GTTTCCGTACGAA-AAACGCC
*
18062 GTTTTCGTACGAAAAACGCC
1 GTTTCCGTACGAAAAACGCC
18082 G
1 G
18083 CTAAATAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (20 bp):
GTTTCCGTACGAAAAACGCC
Found at i:18112 original size:33 final size:33
Alignment explanation
Indices: 18075--18151 Score: 145
Period size: 33 Copynumber: 2.3 Consensus size: 33
18065 TTCGTACGAA
18075 AAACGCCGCTAAATAGTGGCGTTTTTTGCACGG
1 AAACGCCGCTAAATAGTGGCGTTTTTTGCACGG
*
18108 AAACGCCGCTAAATAGTGGCGTTTTTTGTACGG
1 AAACGCCGCTAAATAGTGGCGTTTTTTGCACGG
18141 AAACGCCGCTA
1 AAACGCCGCTA
18152 TTCCAAAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (33 bp):
AAACGCCGCTAAATAGTGGCGTTTTTTGCACGG
Found at i:22362 original size:16 final size:16
Alignment explanation
Indices: 22337--22368 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22327 ATACCTATAG
22337 ATATAATTTTCTCTTC
1 ATATAATTTTCTCTTC
*
22353 ATATATTTTTCTCTTC
1 ATATAATTTTCTCTTC
22369 TAGTTTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.59
Consensus pattern (16 bp):
ATATAATTTTCTCTTC
Found at i:23666 original size:18 final size:18
Alignment explanation
Indices: 23643--23681 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
23633 ACATGTCAGA
*
23643 AATGGCAACAGAAATGGC
1 AATGGCAACAGAAACGGC
*
23661 AATGGCATCAGAAACGGC
1 AATGGCAACAGAAACGGC
23679 AAT
1 AAT
23682 CCACACCATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.44, C:0.18, G:0.26, T:0.13
Consensus pattern (18 bp):
AATGGCAACAGAAACGGC
Found at i:33300 original size:497 final size:497
Alignment explanation
Indices: 32366--33363 Score: 1915
Period size: 497 Copynumber: 2.0 Consensus size: 497
32356 TTCTCTAGAA
32366 CCATTGGAGAGGTGAAGATCATCTATATCTTCCCATATATTGGCCACAACACCATTAGATTGATC
1 CCATTGGAGAGGTGAAGATCATCTATATCTTCCCATATATTGGCCACAACACCATTAGATTGATC
* * *
32431 GCTGGCCAACAACTCACCTATCTCTGCCATCTCTTCGTCATTTAGAAAAATGGATGAAGAATATC
66 GCTGGCCAACAACTCACCTATCTCTGCCATATCTTCATCATTTAGAAAAATAGATGAAGAATATC
32496 CAGGGGAAATAGTCACTTGTGATGAATCTTGGACAATTTCGCTATTTGCCATACGTTCAGGAGAA
131 CAGGGGAAATAGTCACTTGTGATGAATCTTGGACAATTTCGCTATTTGCCATACGTTCAGGAGAA
32561 TAGTTTGGAGAATAGCATGGAGAGTCGACACCGGTAAGATATATTTTTGCCTCCTGAGATGCTAA
196 TAGTTTGGAGAATAGCATGGAGAGTCGACACCGGTAAGATATATTTTTGCCTCCTGAGATGCTAA
32626 AACCTCAGATTGTGGCTTAATTATCTACAATGAAGATGGTAGCATTAGTAATTTTGTTAGGCATA
261 AACCTCAGATTGTGGCTTAATTATCTACAATGAAGATGGTAGCATTAGTAATTTTGTTAGGCATA
32691 ATGCTTGATGAGTTACGAAAGCAAAATATTACCTGCAAAGGAGGTGCATTAACTAAGACATCAGG
326 ATGCTTGATGAGTTACGAAAGCAAAATATTACCTGCAAAGGAGGTGCATTAACTAAGACATCAGG
32756 CTCAATTGGCTTCAGAGACAACTCGTTCAAGTCATGTGACTTTTGTTTCTTCTTTGAACACGAGC
391 CTCAATTGGCTTCAGAGACAACTCGTTCAAGTCATGTGACTTTTGTTTCTTCTTTGAACACGAGC
*
32821 CTATGTGTTTTGCACAATCAACAAATGTGGCACGTTTTTTAG
456 CTATGTGTTTTGCACAATCAACAAATGTGGCACGTTTTTGAG
32863 CCATTGGAGAGGTGAAGATCATCTATATCTTCCCATATATTGGCCACAACACCATTAGATTGATC
1 CCATTGGAGAGGTGAAGATCATCTATATCTTCCCATATATTGGCCACAACACCATTAGATTGATC
32928 GCTGGCCAACAACTCACCTATCTCTGCCATATCTTCATCATTTAGAAAAATAGATGAAGAATATC
66 GCTGGCCAACAACTCACCTATCTCTGCCATATCTTCATCATTTAGAAAAATAGATGAAGAATATC
* * *
32993 CAGGGGAAATCGTCACTTGTGCTGAATCTTGGATAATTTCGCTATTTGCCATACGTTCAGGAGAA
131 CAGGGGAAATAGTCACTTGTGATGAATCTTGGACAATTTCGCTATTTGCCATACGTTCAGGAGAA
33058 TAGTTTGGAGAATAGCATGGAGAGTCGACACCGGTAAGATATATTTTTGCCTCCTGAGATGCTAA
196 TAGTTTGGAGAATAGCATGGAGAGTCGACACCGGTAAGATATATTTTTGCCTCCTGAGATGCTAA
*
33123 AACCTCAGATTGTGGCTTAATTATCTGCAATGAAGATGGTAGCATTAGTAATTTTGTTAGGCATA
261 AACCTCAGATTGTGGCTTAATTATCTACAATGAAGATGGTAGCATTAGTAATTTTGTTAGGCATA
33188 ATGCTTGATGAGTTACGAAAGCAAAATATTACCTGCAAAGGAGGTGCATTAACTAAGACATCAGG
326 ATGCTTGATGAGTTACGAAAGCAAAATATTACCTGCAAAGGAGGTGCATTAACTAAGACATCAGG
33253 CTCAATTGGCTTCAGAGACAACTCGTTCAAGTCATGTGACTTTTGTTTCTTCTTTGAACACGAGC
391 CTCAATTGGCTTCAGAGACAACTCGTTCAAGTCATGTGACTTTTGTTTCTTCTTTGAACACGAGC
*
33318 CTATGTGTTTTGCACAATCAACAGATGTGGCACGTTTTTGAG
456 CTATGTGTTTTGCACAATCAACAAATGTGGCACGTTTTTGAG
33360 CCAT
1 CCAT
33364 CCTTTTGGGC
Statistics
Matches: 492, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
497 492 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31
Consensus pattern (497 bp):
CCATTGGAGAGGTGAAGATCATCTATATCTTCCCATATATTGGCCACAACACCATTAGATTGATC
GCTGGCCAACAACTCACCTATCTCTGCCATATCTTCATCATTTAGAAAAATAGATGAAGAATATC
CAGGGGAAATAGTCACTTGTGATGAATCTTGGACAATTTCGCTATTTGCCATACGTTCAGGAGAA
TAGTTTGGAGAATAGCATGGAGAGTCGACACCGGTAAGATATATTTTTGCCTCCTGAGATGCTAA
AACCTCAGATTGTGGCTTAATTATCTACAATGAAGATGGTAGCATTAGTAATTTTGTTAGGCATA
ATGCTTGATGAGTTACGAAAGCAAAATATTACCTGCAAAGGAGGTGCATTAACTAAGACATCAGG
CTCAATTGGCTTCAGAGACAACTCGTTCAAGTCATGTGACTTTTGTTTCTTCTTTGAACACGAGC
CTATGTGTTTTGCACAATCAACAAATGTGGCACGTTTTTGAG
Found at i:34426 original size:17 final size:18
Alignment explanation
Indices: 34393--34426 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
34383 CCAATTCTCG
34393 TTTATTTATTCCCTGTTA
1 TTTATTTATTCCCTGTTA
*
34411 TTTATTT-TTCCTTGTT
1 TTTATTTATTCCCTGTT
34427 GGACTTGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.15, G:0.06, T:0.68
Consensus pattern (18 bp):
TTTATTTATTCCCTGTTA
Found at i:35422 original size:21 final size:21
Alignment explanation
Indices: 35398--35438 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
35388 TGGAACCCTT
35398 TTGGATTCAAGTGGTACAAAA
1 TTGGATTCAAGTGGTACAAAA
* *
35419 TTGGATTTAAGTGGTTCAAA
1 TTGGATTCAAGTGGTACAAA
35439 TTAGGGTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34
Consensus pattern (21 bp):
TTGGATTCAAGTGGTACAAAA
Found at i:38820 original size:127 final size:128
Alignment explanation
Indices: 38585--38840 Score: 505
Period size: 127 Copynumber: 2.0 Consensus size: 128
38575 AACTTGCAAA
38585 TCATACATAACATGAATGCAGTAAGTTCTTTCTTTTCAAGAGAAGTGCTGCCAAATTTAGCATGA
1 TCATACATAACATGAATGCAGTAAGTTCTTTCTTTTCAAGAGAAGTGCTGCCAAATTTAGCATGA
38650 TCAGTGACGAACTTGGAAAAGAGAGGTCTCTCGGAAACAATGATGTGATAAAGAGGGTCATCT
66 TCAGTGACGAACTTGGAAAAGAGAGGTCTCTCGGAAACAATGATGTGATAAAGAGGGTCATCT
38713 TCATACAT-ACATGAATGCAGTAAGTTCTTTCTTTTCAAGAGAAGTGCTGCCAAATTTAGCATGA
1 TCATACATAACATGAATGCAGTAAGTTCTTTCTTTTCAAGAGAAGTGCTGCCAAATTTAGCATGA
38777 TCAGTGACGAACTTGGAAAAGAGAGGTCTCTCGGAAACAATGATGTGATAAAGAGGGTCATCT
66 TCAGTGACGAACTTGGAAAAGAGAGGTCTCTCGGAAACAATGATGTGATAAAGAGGGTCATCT
38840 T
1 T
38841 TGGCACTTAA
Statistics
Matches: 128, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
127 120 0.94
128 8 0.06
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.28
Consensus pattern (128 bp):
TCATACATAACATGAATGCAGTAAGTTCTTTCTTTTCAAGAGAAGTGCTGCCAAATTTAGCATGA
TCAGTGACGAACTTGGAAAAGAGAGGTCTCTCGGAAACAATGATGTGATAAAGAGGGTCATCT
Found at i:41296 original size:26 final size:27
Alignment explanation
Indices: 41267--41330 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
41257 TATTGATTAC
*
41267 CCTTACTCTTTTTACTGATTACCA-TT
1 CCTTACTCTTTTCACTGATTACCATTT
*
41293 CCTTACTCTTTTCACTTATTACCATTT
1 CCTTACTCTTTTCACTGATTACCATTT
*
41320 TCTTACTCTTT
1 CCTTACTCTTT
41331 CTTTTTTCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 22 0.65
27 12 0.35
ACGTcount: A:0.17, C:0.28, G:0.02, T:0.53
Consensus pattern (27 bp):
CCTTACTCTTTTCACTGATTACCATTT
Found at i:41400 original size:9 final size:9
Alignment explanation
Indices: 41386--41424 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
41376 CTGAATACCA
41386 TTTTTACTC
1 TTTTTACTC
*
41395 TTTTTAATC
1 TTTTTACTC
41404 TTTTTAC-C
1 TTTTTACTC
41412 ATTTTTACTC
1 -TTTTTACTC
41422 TTT
1 TTT
41425 GAATTTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
8 1 0.04
9 24 0.92
10 1 0.04
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTTACTC
Found at i:41462 original size:22 final size:22
Alignment explanation
Indices: 41434--41488 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
41424 TGAATTTTAA
41434 TTACTGATTACCA-ATACCCTTT
1 TTACTGATTACCATATACCC-TT
* *
41456 TTACTGATTACCATTTACTCTT
1 TTACTGATTACCATATACCCTT
41478 TTACTGATTAC
1 TTACTGATTAC
41489 TATTACTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.25, C:0.24, G:0.05, T:0.45
Consensus pattern (22 bp):
TTACTGATTACCATATACCCTT
Found at i:41553 original size:42 final size:42
Alignment explanation
Indices: 41454--41676 Score: 214
Period size: 42 Copynumber: 5.4 Consensus size: 42
41444 CCAATACCCT
*
41454 TTTTACTGATTAC-CATTTACTCTTTTACTGATTACTATTACTC
1 TTTTACTGATTACTC-TTTACTC-TTTACTAATTACTATTACTC
* * * *
41497 --TTCCTTGATCACTCTTTACTCTTTACTAACTATTATTACTC
1 TTTTAC-TGATTACTCTTTACTCTTTACTAATTACTATTACTC
*
41538 TTTTACTGATTACTCTTTACTCTTTACTGATTACTATTACTC
1 TTTTACTGATTACTCTTTACTCTTTACTAATTACTATTACTC
* *
41580 TTTTCCTGATTACTCTTTACTCTTTTACTGATTAC---TA-T-
1 TTTTACTGATTACTCTTTACTC-TTTACTAATTACTATTACTC
* *
41618 TTTT-CTGATTGCTCTCTTATTCTTTACTAATTACTATTAC-C
1 TTTTACTGATTACTCT-TTACTCTTTACTAATTACTATTACTC
* *
41659 ATTGTGCTGATTACTCTT
1 -TTTTACTGATTACTCTT
41677 CACTATTTGA
Statistics
Matches: 151, Mismatches: 16, Indels: 27
0.78 0.08 0.14
Matches are distributed among these distances:
37 21 0.14
38 9 0.06
39 1 0.01
40 4 0.03
41 20 0.13
42 70 0.46
43 26 0.17
ACGTcount: A:0.21, C:0.22, G:0.05, T:0.52
Consensus pattern (42 bp):
TTTTACTGATTACTCTTTACTCTTTACTAATTACTATTACTC
Found at i:41608 original size:8 final size:7
Alignment explanation
Indices: 41532--41604 Score: 51
Period size: 7 Copynumber: 10.3 Consensus size: 7
41522 CTAACTATTA
41532 TTACTCTT
1 TTACTC-T
**
41540 TTACTGA
1 TTACTCT
41547 TTACTCT
1 TTACTCT
41554 TTACTCT
1 TTACTCT
**
41561 TTACTGA
1 TTACTCT
*
41568 TTACT-A
1 TTACTCT
41574 TTACTCT
1 TTACTCT
*
41581 TTTC-CT
1 TTACTCT
41587 GATTACTCT
1 --TTACTCT
41596 TTACTCT
1 TTACTCT
41603 TT
1 TT
41605 TACTGATTAC
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
6 8 0.15
7 34 0.65
8 8 0.15
9 2 0.04
ACGTcount: A:0.18, C:0.23, G:0.04, T:0.55
Consensus pattern (7 bp):
TTACTCT
Found at i:41626 original size:37 final size:35
Alignment explanation
Indices: 41554--41655 Score: 114
Period size: 37 Copynumber: 2.8 Consensus size: 35
41544 TGATTACTCT
** *
41554 TTACTCTTTACTGATTACTATTACTCTTTTCCTGA
1 TTACTCTTTACTCTTTACTATTACTATTTTCCTGA
*
41589 TTACTCTTTACTCTTTTACTGATTACTATTTTTCTGA
1 TTACTCTTTACTC-TTTACT-ATTACTATTTTCCTGA
* *
41626 TTGCTCTCTTATTCTTTACTAATTACTATT
1 TTACTCT-TTACTCTTTACT-ATTACTATT
41656 ACCATTGTGC
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
35 12 0.21
36 5 0.09
37 35 0.61
38 5 0.09
ACGTcount: A:0.20, C:0.21, G:0.05, T:0.55
Consensus pattern (35 bp):
TTACTCTTTACTCTTTACTATTACTATTTTCCTGA
Found at i:52656 original size:30 final size:30
Alignment explanation
Indices: 52620--52676 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
52610 AGTTCGTGAT
*
52620 TGAAGATTAATTGAAGATA-ATTTCAAGTCC
1 TGAAGA-TAATTGAAGAAATATTTCAAGTCC
*
52650 TGAAGATCATTGAAGAAATATTTCAAG
1 TGAAGATAATTGAAGAAATATTTCAAG
52677 GAGAAAGAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.32
Consensus pattern (30 bp):
TGAAGATAATTGAAGAAATATTTCAAGTCC
Found at i:66042 original size:15 final size:16
Alignment explanation
Indices: 66022--66061 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
66012 AGAGGTTGAA
66022 AGAAAACAATTAAAC-
1 AGAAAACAATTAAACT
*
66037 AGAAAACAATTATACT
1 AGAAAACAATTAAACT
66053 AGAAAACAA
1 AGAAAACAA
66062 AACAAAGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.65, C:0.12, G:0.07, T:0.15
Consensus pattern (16 bp):
AGAAAACAATTAAACT
Found at i:67669 original size:15 final size:16
Alignment explanation
Indices: 67649--67688 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
67639 AGAGGTTGAA
67649 AGAAAACAATTAAAC-
1 AGAAAACAATTAAACT
*
67664 AGAAAACAATTATACT
1 AGAAAACAATTAAACT
67680 AGAAAACAA
1 AGAAAACAA
67689 AACAAAGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.65, C:0.12, G:0.07, T:0.15
Consensus pattern (16 bp):
AGAAAACAATTAAACT
Found at i:85302 original size:109 final size:109
Alignment explanation
Indices: 85111--85326 Score: 369
Period size: 109 Copynumber: 2.0 Consensus size: 109
85101 TAGTGATTTT
*
85111 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTACACTTTGTATTGTTTGGAATGTGTGCTT
1 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTACACTTTGTATTGTATGGAATGTGTGCTT
85176 ATTTAATAGGTTCAATTGAATAAACAACACAATTAATAATAATA
66 ATTTAATAGGTTCAATTGAATAAACAACACAATTAATAATAATA
* * * *
85220 GGTGCTTGTATTTTTCTTTAAATCCATTAGTTCATTGCATTTTGTATTGTATGGTATGTGTGCTT
1 GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTACACTTTGTATTGTATGGAATGTGTGCTT
* *
85285 ATTTAATATGTTCAATTGAATAAACCACACAATTAATAATAA
66 ATTTAATAGGTTCAATTGAATAAACAACACAATTAATAATAA
85327 CATATATAAT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
109 100 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (109 bp):
GGTGCTTGTATTTTTCTTTAAATCCAATAGTTCATTACACTTTGTATTGTATGGAATGTGTGCTT
ATTTAATAGGTTCAATTGAATAAACAACACAATTAATAATAATA
Found at i:87908 original size:24 final size:25
Alignment explanation
Indices: 87862--87909 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
87852 ATAGGAGTAT
*
87862 TTATTTATCTTGTTGCTTAATTTTA
1 TTATTTATCTTGTTGATTAATTTTA
* *
87887 TTATTT-TCTTGTTTATTTATTTT
1 TTATTTATCTTGTTGATTAATTTT
87910 TATTGTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (25 bp):
TTATTTATCTTGTTGATTAATTTTA
Found at i:101983 original size:18 final size:18
Alignment explanation
Indices: 101960--101994 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
101950 TCGAGATAAT
101960 TCTTCAATGATCTTCAAA
1 TCTTCAATGATCTTCAAA
*
101978 TCTTCAATTATCTTCAA
1 TCTTCAATGATCTTCAA
101995 TAAGTCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.23, G:0.03, T:0.43
Consensus pattern (18 bp):
TCTTCAATGATCTTCAAA
Found at i:102004 original size:11 final size:10
Alignment explanation
Indices: 101955--102005 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
101945 GCTTATCGAG
101955 ATAATTCTTCA
1 ATAA-TCTTCA
*
101966 ATGATCTTC-
1 ATAATCTTCA
101975 A-AATCTTCA
1 ATAATCTTCA
*
101984 ATTATCTTCA
1 ATAATCTTCA
101994 ATAAGTCTTCA
1 ATAA-TCTTCA
102005 A
1 A
102006 ACACAAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
8 6 0.18
9 2 0.06
10 15 0.45
11 10 0.30
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (10 bp):
ATAATCTTCA
Found at i:102004 original size:21 final size:19
Alignment explanation
Indices: 101955--102005 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
101945 GCTTATCGAG
101955 ATAATTCTTCAATGATCTTC
1 ATAA-TCTTCAATGATCTTC
*
101975 A-AATCTTCAATTATCTTC
1 ATAATCTTCAATGATCTTC
101993 AATAAGTCTTCAA
1 -ATAA-TCTTCAA
102006 ACACAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 14 0.52
19 3 0.11
20 3 0.11
21 7 0.26
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (19 bp):
ATAATCTTCAATGATCTTC
Found at i:106067 original size:154 final size:154
Alignment explanation
Indices: 105787--106226 Score: 774
Period size: 154 Copynumber: 2.9 Consensus size: 154
105777 AGATTCGTAT
* * * *
105787 CACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCATTTTAAATAGTCTTCGATTTGGCAAC
1 CACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATAGTCTTCGATTTGGCAAA
*
105852 CCTCGATGCTTTTCTTGCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
66 CCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
105917 GTGAAGTTTTTAGCTCATTTGGAA
131 GTGAAGTTTTTAGCTCATTTGGAA
*
105941 CACTTGTTATTTTGGGCCTAT-GTGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAA
1 CACTTGTTATTTTGGGCCTATCG-GGGCCCATTAGTGACGTTTTGAATAGTCTTCGATTTGGCAA
106005 ACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCAC
65 ACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCAC
106070 TGTGAAGTTTTTAGCTCATTTGGAA
130 TGTGAAGTTTTTAGCTCATTTGGAA
* * *
106095 CACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATTGTCTTCGATTTGGTAAA
1 CACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATAGTCTTCGATTTGGCAAA
*
106160 CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
66 CCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
106225 GT
131 GT
106227 TTCCATTGTT
Statistics
Matches: 274, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
153 1 0.00
154 272 0.99
155 1 0.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (154 bp):
CACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATAGTCTTCGATTTGGCAAA
CCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
GTGAAGTTTTTAGCTCATTTGGAA
Found at i:106231 original size:52 final size:52
Alignment explanation
Indices: 106174--106274 Score: 202
Period size: 52 Copynumber: 1.9 Consensus size: 52
106164 AATGCTTTTC
106174 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
106226 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
106275 TTGTGAAGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43
Consensus pattern (52 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
Found at i:106374 original size:206 final size:206
Alignment explanation
Indices: 106020--106429 Score: 732
Period size: 206 Copynumber: 2.0 Consensus size: 206
106010 GATGCTTTTC
106020 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
106085 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATTGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTGACGTTTTGAATCGTCTTCG
* * *
106150 ATTTGGTAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
131 ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGCTGAGA
106215 TTAGTCCACTG
196 TTAGTCCACTG
*
106226 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
*
106291 TCATTTGGAACACTTGTTATTTTGGGCCTATT-GGGGACCATTAGTGACGTTTTGAATCGTTTTC
66 TCATTTGGAACACTTGTTATTTTGGGCCT-TTCGGGGACCATTAGTGACGTTTTGAATCGTCTTC
*
106355 GATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATGATAATTTTGCTGAG
130 GATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGCTGAG
106420 ATTAGTCCAC
195 ATTAGTCCAC
106430 GGTGAAGTTT
Statistics
Matches: 195, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
206 193 0.99
207 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.42
Consensus pattern (206 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTGACGTTTTGAATCGTCTTCG
ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGCTGAGA
TTAGTCCACTG
Found at i:106510 original size:154 final size:154
Alignment explanation
Indices: 106226--106893 Score: 1074
Period size: 154 Copynumber: 4.3 Consensus size: 154
106216 TAGTCCACTG
*
106226 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* **
106291 TCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGACCATTAGTGACGTTTTGAATCGTTTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGACTTCG
106356 ATTTGGCAAACCTCAATGCTTTTC
131 ATTTGGCAAACCTCAATGCTTTTC
* * * *
106380 TTTCCATTGTTTATGGCCTAACTATGATAATTTTGCTGAGATTAGTCCACGGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * *
106445 TCATTTGGAACACTTGTTAATTTGGGCCTATCGGGGTCCATTAGTTACGTTTTGAATCGACTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGACTTCG
* *
106510 ATTTGGCGAACCTCGATGCTTTTC
131 ATTTGGCAAACCTCAATGCTTTTC
* *
106534 TTGCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
106599 TCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGACACATTAGTGCCGTTTTGAATCGTCTTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGAC-CATTAGTGACGTTTTGAATCGACTTC
106663 GATTTGGCAAACCTCAATGCTTTTC
130 GATTTGGCAAACCTCAATGCTTTTC
106688 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * *
106753 TCATTTAGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTG-CGTTTTGAATCGTA-TTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCG-ACTTC
* * *
106816 GATCTGGCAAACCCCGATGC-TTTC
130 GATTTGGCAAACCTCAATGCTTTTC
106840 TTTCCATTGTTTATGGCCTAACTACTAATCATTTTGGTGAGATTAGTCCACTGT
1 TTTCCATTGTTTATGGCCTAACTA-TAATCATTTTGGTGAGATTAGTCCACTGT
106894 TTCCATTGTT
Statistics
Matches: 475, Mismatches: 35, Indels: 9
0.92 0.07 0.02
Matches are distributed among these distances:
152 28 0.06
153 65 0.14
154 378 0.80
155 4 0.01
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.40
Consensus pattern (154 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGACTTCG
ATTTGGCAAACCTCAATGCTTTTC
Found at i:106531 original size:360 final size:360
Alignment explanation
Indices: 105869--106584 Score: 1254
Period size: 360 Copynumber: 2.0 Consensus size: 360
105859 GCTTTTCTTG
105869 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
*
105934 TTTGGAACACTTGTTATTTTGGGCCTATGTGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
66 TTTGGAACACTTGTTATTTTGGGCCTATGTGGGACCATTAGTGACGTTTTGAATCGTCTTCGATT
* * *
105999 TGGCAAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
131 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGCTGAGATTA
* * *
106064 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAG
196 GTCCACGGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAATTTGGGCCTATCGGGGCCCATTAG
* * * *
106129 TGACGTTTTGAATTGTCTTCGATTTGGTAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
261 TGACGTTTTGAATCGACTTCGATTTGGCAAACCTCAATGCTTTTCTTGCCATTGTTTATGGCCTA
106194 ACTATAATCATTTTGGTGAGATTAGTCCACTGTTT
326 ACTATAATCATTTTGGTGAGATTAGTCCACTGTTT
*
106229 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCA
1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
*
106294 TTTGGAACACTTGTTATTTTGGGCCTAT-TGGGGACCATTAGTGACGTTTTGAATCGTTTTCGAT
66 TTTGGAACACTTGTTATTTTGGGCCTATGT-GGGACCATTAGTGACGTTTTGAATCGTCTTCGAT
*
106358 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATGATAATTTTGCTGAGATT
130 TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGCTGAGATT
*
106423 AGTCCACGGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAATTTGGGCCTATCGGGGTCCATTA
195 AGTCCACGGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAATTTGGGCCTATCGGGGCCCATTA
* * *
106488 GTTACGTTTTGAATCGACTTCGATTTGGCGAACCTCGATGCTTTTCTTGCCATTGTTTATGGCCT
260 GTGACGTTTTGAATCGACTTCGATTTGGCAAACCTCAATGCTTTTCTTGCCATTGTTTATGGCCT
106553 AACTATAATCATTTTGGTGAGATTAGTCCACT
325 AACTATAATCATTTTGGTGAGATTAGTCCACT
106585 ATGAAGTTTT
Statistics
Matches: 337, Mismatches: 18, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
359 1 0.00
360 336 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (360 bp):
CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
TTTGGAACACTTGTTATTTTGGGCCTATGTGGGACCATTAGTGACGTTTTGAATCGTCTTCGATT
TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGCTGAGATTA
GTCCACGGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAATTTGGGCCTATCGGGGCCCATTAG
TGACGTTTTGAATCGACTTCGATTTGGCAAACCTCAATGCTTTTCTTGCCATTGTTTATGGCCTA
ACTATAATCATTTTGGTGAGATTAGTCCACTGTTT
Found at i:106938 original size:52 final size:53
Alignment explanation
Indices: 106840--106945 Score: 187
Period size: 52 Copynumber: 2.0 Consensus size: 53
106830 CGATGCTTTC
106840 TTTCCATTGTTTATGGCCTAACTACTAATCATTTTGGTGAGATTAGTCCACTG
1 TTTCCATTGTTTATGGCCTAACTACTAATCATTTTGGTGAGATTAGTCCACTG
* *
106893 TTTCCATTGTTTATGGCCTAAGTA-TAATCATTTTGGTGATATTAGTCCACTG
1 TTTCCATTGTTTATGGCCTAACTACTAATCATTTTGGTGAGATTAGTCCACTG
106945 T
1 T
106946 GAAGTTTTTA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 28 0.55
53 23 0.45
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (53 bp):
TTTCCATTGTTTATGGCCTAACTACTAATCATTTTGGTGAGATTAGTCCACTG
Found at i:107092 original size:205 final size:205
Alignment explanation
Indices: 106688--107098 Score: 666
Period size: 205 Copynumber: 2.0 Consensus size: 205
106678 AATGCTTTTC
106688 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * * *
106753 TCATTTAGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGCGTTTTGAATCGTATTCGA
66 ACATTTAGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTGCGTTTTGAATCGTAATCGA
*
106818 TCTGGCAAACCCCGATGCTTTCTTTCCATTGTTTATGGCCTAACTACTAATCATTTTGGTGAGAT
131 TCTGGCAAACCCCAATGCTTTCTTTCCATTGTTTATGGCCTAACTACTAATCATTTTGGTGAGAT
106883 TAGTCCACTG
196 TAGTCCACTG
* *
106893 TTTCCATTGTTTATGGCCTAAGTATAATCATTTTGGTGATATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
*
106958 ACATTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTGACGTTTTGAATCG-ACATC
66 ACATTTAGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTG-CGTTTTGAATCGTA-ATC
* *
107022 GATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTA-TAATCATTTTGGTGA
129 GATCTGGCAAACCCCAATGC-TTTCTTTCCATTGTTTATGGCCTAACTACTAATCATTTTGGTGA
107086 -ATTAGTCCACTG
193 GATTAGTCCACTG
107098 T
1 T
107099 GAAGTTTTTA
Statistics
Matches: 191, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
205 117 0.61
206 46 0.24
207 28 0.15
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (205 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
ACATTTAGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTGCGTTTTGAATCGTAATCGA
TCTGGCAAACCCCAATGCTTTCTTTCCATTGTTTATGGCCTAACTACTAATCATTTTGGTGAGAT
TAGTCCACTG
Found at i:107201 original size:359 final size:357
Alignment explanation
Indices: 106537--107611 Score: 1891
Period size: 358 Copynumber: 3.0 Consensus size: 357
106527 GCTTTTCTTG
* *
106537 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGCTCA
1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCACA
* *
106602 TTTGGAACACTTGTTATTTTGGGCCTATCGGGACACATTAGTGCCGTTTTGAATCGTCTTCGATT
66 TTTGGAACACTTGTTATTTTGGGCCTATGGGGAC-CATTAGTGACGTTTTGAATCGTCTTCGATT
106667 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
130 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA-ATTA
*
106732 GTCCACTGTGAAGTTTTTAGCTCATTTAGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAG
194 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAG
106797 TGCGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGC-TTTCTTTCCATTGTTTATGGCCTAA
259 TGCGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAA
106861 CTACTAATCATTTTGGTGAGATTAGTCCACTGTTT
324 CTA-TAATCATTTTGGTGAGATTAGTCCACTGTTT
* *
106896 CCATTGTTTATGGCCTAAGTATAATCATTTTGGTGATATTAGTCCACTGTGAAGTTTTTAGCACA
1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCACA
* * * *
106961 TTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTGACGTTTTGAATCGACATCGATT
66 TTTGGAACACTTGTTATTTTGGGCCTAT-GGGGACCATTAGTGACGTTTTGAATCGTCTTCGATT
107026 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAATTAG
130 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAATTAG
*
107091 TCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATATTGGGCCTTTCGGGGCCCATTAGT
195 TCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGT
107156 GCGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAAC
260 GCGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAAC
*
107221 TATAATCATTTTGGTGAGATTAGTCTACTGTTT
325 TATAATCATTTTGGTGAGATTAGTCCACTGTTT
107254 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCACA
1 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCACA
* * **
107319 TTCGGAACACTTGTTATTTTGGGCCTATTGGGACACATTAGTTCCGTTTTGAATCGTCTTCGATT
66 TTTGGAACACTTGTTATTTTGGGCCTATGGGGAC-CATTAGTGACGTTTTGAATCGTCTTCGATT
107384 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGACATTA
130 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA-ATTA
107449 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAG
194 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAG
* * * *
107514 TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
259 TG-CGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTA
107579 ACTATAATCATTTTGGTGAGATTAGTCCACTGT
323 ACTATAATCATTTTGGTGAGATTAGTCCACTGT
107612 GAAGTTTTTA
Statistics
Matches: 682, Mismatches: 29, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
357 5 0.01
358 310 0.45
359 272 0.40
360 95 0.14
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (357 bp):
CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCACA
TTTGGAACACTTGTTATTTTGGGCCTATGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATTT
GGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAATTAGT
CCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTG
CGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACT
ATAATCATTTTGGTGAGATTAGTCCACTGTTT
Found at i:107227 original size:152 final size:154
Alignment explanation
Indices: 106893--107251 Score: 589
Period size: 153 Copynumber: 2.3 Consensus size: 154
106883 TAGTCCACTG
* *
106893 TTTCCATTGTTTATGGCCTAAGTATAATCATTTTGGTGATATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
106958 ACATTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTGACGTTTTGAATCGACATCG
66 ACATTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTGACGTTTTGAATCGACATCG
* *
107023 ATTTGGCAAACCTCAATGCTTTTC
131 ATCTGGCAAACCCCAATGCTTTTC
107047 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA-ATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * *
107111 TCATTTGGAACACTTGTTATATTGGGCCTTTCGGGGCCCATTAGTG-CGTTTTGAATCGTA-TTC
66 ACATTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTGACGTTTTGAATCG-ACATC
*
107174 GATCTGGCAAACCCCGATGCTTTTC
130 GATCTGGCAAACCCCAATGCTTTTC
*
107199 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCTACTGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
107252 TTCCATTGTT
Statistics
Matches: 193, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
152 75 0.39
153 80 0.41
154 38 0.20
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (154 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
ACATTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTGACGTTTTGAATCGACATCG
ATCTGGCAAACCCCAATGCTTTTC
Found at i:107277 original size:52 final size:52
Alignment explanation
Indices: 107199--107303 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
107189 GATGCTTTTC
*
107199 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCTACTG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
107251 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
107303 T
1 T
107304 GAAGTTTTTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.23, C:0.16, G:0.17, T:0.44
Consensus pattern (52 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
Found at i:107427 original size:206 final size:204
Alignment explanation
Indices: 107047--107457 Score: 680
Period size: 206 Copynumber: 2.0 Consensus size: 204
107037 AATGCTTTTC
*
107047 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAATTAGTCCACTGTGAAGTTTTTAGCT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAATTAGTCCACTGTGAAGTTTTTAGCA
* * * *
107112 CATTTGGAACACTTGTTATATTGGGCCTTTCGGGGCCCATTAGTGCGTTTTGAATCGTATTCGAT
66 CATTCGGAACACTTGTTATATTGGGCCTTTCGGGACACATTAGTCCGTTTTGAATCGTATTCGAT
* *
107177 CTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
131 CTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGACATT
*
107242 AGTCTACTG
196 AGTCCACTG
107251 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA-ATTAGTCCACTGTGAAGTTTTTAGC
* *
107316 ACATTCGGAACACTTGTTATTTTGGGCCTATT-GGGACACATTAGTTCCGTTTTGAATCGTCTTC
65 ACATTCGGAACACTTGTTATATTGGGCCT-TTCGGGACACATTAG-TCCGTTTTGAATCGTATTC
* *
107380 GATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAC
128 GATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAC
107445 ATTAGTCCACTG
193 ATTAGTCCACTG
107457 T
1 T
107458 GAAGTTTTTA
Statistics
Matches: 192, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
204 39 0.20
205 61 0.32
206 92 0.48
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (204 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAATTAGTCCACTGTGAAGTTTTTAGCA
CATTCGGAACACTTGTTATATTGGGCCTTTCGGGACACATTAGTCCGTTTTGAATCGTATTCGAT
CTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGACATT
AGTCCACTG
Found at i:107531 original size:154 final size:154
Alignment explanation
Indices: 107251--107918 Score: 1088
Period size: 154 Copynumber: 4.3 Consensus size: 154
107241 TAGTCTACTG
107251 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * **
107316 ACATTCGGAACACTTGTTATTTTGGGCCTATT-GGGACACATTAGTTCCGTTTTGAATCGTCTTC
66 TCATTTGGAACACTTGTTATTTTGGGCCT-TTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTC
* *
107380 GATTTGGCAAACCTCAATGCTTTTC
130 GATCTGGCAAACCCCAATGCTTTTC
*
107405 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGACATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
107470 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
* *
107535 ATTTGGCAAACCTCAATGCTTTTC
131 ATCTGGCAAACCCCAATGCTTTTC
107559 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
107624 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTACTG-CGTTTTGAATCGTATTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
*
107688 ATCTGGCAAACCCCGATGCTTTTC
131 ATCTGGCAAACCCCAATGCTTTTC
* * * *
107712 TTTCCATTGTTTATGGCCTAACTATAATCACTTTAGTGTGATTAGTCCACTGTGAAGATTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * ** *
107777 TAATTTGGAACACTTGTAATTTTGGGCCTAACGGGGACCATTAGTGACGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
*
107842 ATCTGGCAAACCCCGATGCTTTTC
131 ATCTGGCAAACCCCAATGCTTTTC
*
107866 TTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
107919 TTCCATTGTT
Statistics
Matches: 484, Mismatches: 28, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
153 141 0.29
154 343 0.71
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (154 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
ATCTGGCAAACCCCAATGCTTTTC
Found at i:107944 original size:52 final size:53
Alignment explanation
Indices: 107866--107971 Score: 187
Period size: 52 Copynumber: 2.0 Consensus size: 53
107856 GATGCTTTTC
*
107866 TTTCCAATGTTTATGGCCTAACTATAATCA-TTTTGGTGAGATTAGTCCACTG
1 TTTCCAATGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTG
*
107918 TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTG
1 TTTCCAATGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTG
107971 T
1 T
107972 GAAGTTTTTA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 29 0.57
53 22 0.43
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.41
Consensus pattern (53 bp):
TTTCCAATGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTG
Found at i:107985 original size:207 final size:207
Alignment explanation
Indices: 107712--108110 Score: 631
Period size: 208 Copynumber: 1.9 Consensus size: 207
107702 GATGCTTTTC
*
107712 TTTCCATTGTTTATGGCCTAACTATAATCACTTTAGTGTGATTAGTCCACTGTGAAGATTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCACTTTAGTGAGATTAGTCCACTGTGAAGATTTTAGC
* *
107777 TA-ATTTGGAACACTTGTAATTTTGGGCCTAACGGGGAC-CATTAGTGACGTTTTGAATCGTCTT
66 TACATTCGGAACACTTGTAATTTTGGGCCT-ACGGGGACACATTAGTGACGATTTGAATCGTCTT
*
107840 CGATCTGGCAAACCCCGATGCTTTTCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGA
130 CGATCTGGCAAACCCCAATGCTTTTCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGA
107905 GATTAGTCCACTG
195 GATTAGTCCACTG
* *
107918 TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCACTTT-AGTGAGATTAGTCCACTGTGAAGATTTTAG
* ** ** *
107983 CTACATTCGGAACACTTGTTATTTTGGGCCTATTGGGACACATTAGTTCCGATTTGAATCGTTTT
65 CTACATTCGGAACACTTGTAATTTTGGGCCTACGGGGACACATTAGTGACGATTTGAATCGTCTT
* * *
108048 CGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
130 CGATCTGGCAAACCCCAATGCTTTTCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGT
108111 AAATTTAGTC
Statistics
Matches: 175, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
206 34 0.19
207 36 0.21
208 105 0.60
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (207 bp):
TTTCCATTGTTTATGGCCTAACTATAATCACTTTAGTGAGATTAGTCCACTGTGAAGATTTTAGC
TACATTCGGAACACTTGTAATTTTGGGCCTACGGGGACACATTAGTGACGATTTGAATCGTCTTC
GATCTGGCAAACCCCAATGCTTTTCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAG
ATTAGTCCACTG
Found at i:108205 original size:155 final size:154
Alignment explanation
Indices: 107918--109046 Score: 1681
Period size: 155 Copynumber: 7.3 Consensus size: 154
107908 TAGTCCACTG
*
107918 TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCA-TTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG
* * * * ** *
107983 CTACATTCGGAACACTTGTTATTTTGGGCCTATTGGGACACATTAGTTCCG-ATTTGAATCGTTT
65 CT-CATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTA-TTGAATCGTCT
108047 TCGATTTGGCAAACCTCAATGCTTTTC
128 TCGATTTGGCAAACCTCAATGCTTTTC
* *
108074 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT-AAATTTAGTCTACTGTGAAGTTTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA-TTAGTCCACTGTGAAGTTTTTAG
* * * *
108138 TCTCATTTGGAACAATTGTTATTTTGCGCCAATCGGGGCCCATTAGTGACGTATTGAATAGTCTT
65 -CTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTT
108203 CGATTTGGCAAACCTCAATGCTTTTC
129 CGATTTGGCAAACCTCAATGCTTTTC
108229 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAG-TTTTAGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG-
*
108293 CTCATTTGGAACAACTTGTTATTTTGGGCCGTATC---G------AGTGACGTATTGAATAGTCT
65 CTCATTTGGAAC-ACTTGTTATTTTGGGCC-TATCGGGGCCCATTAGTGACGTATTGAATCGTCT
108349 TCGATTTGGCAAACCTCAATGCTTTTC
128 TCGATTTGGCAAACCTCAATGCTTTTC
*
108376 TTTCCATTTGTTTATGGCCTAACTATAATCATTTTGGTGAGTATTAGTCCACTGTGATGTTTTTA
1 TTTCCA-TTGTTTATGGCCTAACTATAATCATTTTGGTGAG-ATTAGTCCACTGTGAAGTTTTTA
*
108441 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATAGTCTT
64 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTT
108506 CGATTTGGCAAACCTCAATGCTTTTC
129 CGATTTGGCAAACCTCAATGCTTTTC
*
108532 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGTTTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * ** * * *
108597 TCAATTGGAACACTTGCTATTTTGGGCCTATGGGGGCCCATTAGTTCCGTTTTCAATCTTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCG
108662 ATTTGGCAAACCTCAATGCTTTTC
131 ATTTGGCAAACCTCAATGCTTTTC
* * *
108686 TTTCCATTGTTTATGGCCTAACCATAATCAGTTTGGTGAGAGTAGTCCACTCGTGAAGTTTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT-GTGAAGTTTTTAG
*
108751 CTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTC
65 CTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTC
* *
108816 GATTTGGCGAACCTCGATGCTTTTC
130 GATTTGGCAAACCTCAATGCTTTTC
* * *
108841 TTTCCATTGTTTATGGCCTAACTATTATCATTTTTGTGTGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
108906 TCATTTGGAACACTTGTTATATTGGGCCTTTCGGGGCCCATTAGTG-CGTTTTGAATCGTATTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCG
* * *
108970 ATCTGGCAAACCCCGATGCTTTTC
131 ATTTGGCAAACCTCAATGCTTTTC
*
108994 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCTACTGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
109047 TTCCATTGTT
Statistics
Matches: 894, Mismatches: 60, Indels: 41
0.90 0.06 0.04
Matches are distributed among these distances:
147 57 0.06
148 51 0.06
149 28 0.03
150 7 0.01
153 88 0.10
154 229 0.26
155 343 0.38
156 91 0.10
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (154 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTATTGAATCGTCTTCG
ATTTGGCAAACCTCAATGCTTTTC
Found at i:108854 original size:309 final size:307
Alignment explanation
Indices: 107918--109046 Score: 1688
Period size: 309 Copynumber: 3.7 Consensus size: 307
107908 TAGTCCACTG
*
107918 TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCA-TTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG
* * * *
107983 CT-ACATTCGGAACACTTGTTATTTTGGGCCTATTGGGACACATTAGTTCCGATTTGAATCGTTT
65 CTCA-ATT-GGAACACTTGTTATTTTGGGCCTA-TGGGGCCCATTAGTTCCGTTTTGAATCGTCT
108047 TCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT-
127 TCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG
* * * * *
108111 AAATTTAGTCTACTGTGAAGTTTTTAGTCTCATTTGGAACAATTGTTATTTTGCGCCAATCGGGG
192 AGA-TTAGTCCACTGTGAAGTTTTTAG-CTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGG
108176 CCCATTAGTGACGTATTGAATAGTCTTCGATTTGGCAAACCTCAATGCTTTTC
255 CCCATTAGTGACGTATTGAATAGTCTTCGATTTGGCAAACCTCAATGCTTTTC
108229 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAG-TTTTAGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG-
* * ** * *
108293 CTCATTTGGAACAACTTGTTATTTTGGGCCGTAT------C--GAGTGACGTATTGAATAGTCTT
65 CTCAATTGGAAC-ACTTGTTATTTTGGGCC-TATGGGGCCCATTAGTTCCGTTTTGAATCGTCTT
108350 CGATTTGGCAAACCTCAATGCTTTTCTTTCCATTTGTTTATGGCCTAACTATAATCATTTTGGTG
128 CGATTTGGCAAACCTCAATGCTTTTCTTTCCA-TTGTTTATGGCCTAACTATAATCATTTTGGTG
*
108415 AGTATTAGTCCACTGTGATGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGC
192 AG-ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGC
108480 CCATTAGTGACGTATTGAATAGTCTTCGATTTGGCAAACCTCAATGCTTTTC
256 CCATTAGTGACGTATTGAATAGTCTTCGATTTGGCAAACCTCAATGCTTTTC
*
108532 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGTTTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * *
108597 TCAATTGGAACACTTGCTATTTTGGGCCTATGGGGGCCCATTAGTTCCGTTTTCAATCTTCTTCG
66 TCAATTGGAACACTTGTTATTTTGGGCCTAT-GGGGCCCATTAGTTCCGTTTTGAATCGTCTTCG
* *
108662 ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACCATAATCAGTTTGGTGAGA
130 ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
*
108727 GTAGTCCACTCGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
195 TTAGTCCACT-GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCA
* * * *
108792 TTAGTGACGTTTTGAATCGTCTTCGATTTGGCGAACCTCGATGCTTTTC
259 TTAGTGACGTATTGAATAGTCTTCGATTTGGCAAACCTCAATGCTTTTC
* * *
108841 TTTCCATTGTTTATGGCCTAACTATTATCATTTTTGTGTGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * *
108906 TCATTTGGAACACTTGTTATATTGGGCCTTTCGGGGCCCATTAG-TGCGTTTTGAATCGTATTCG
66 TCAATTGGAACACTTGTTATTTTGGGCCTAT-GGGGCCCATTAGTTCCGTTTTGAATCGTCTTCG
* * *
108970 ATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
130 ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
*
109035 TTAGTCTACTGT
195 TTAGTCCACTGT
109047 TTCCATTGTT
Statistics
Matches: 747, Mismatches: 53, Indels: 40
0.89 0.06 0.05
Matches are distributed among these distances:
301 3 0.00
302 63 0.08
303 185 0.25
304 29 0.04
305 1 0.00
307 2 0.00
308 95 0.13
309 241 0.32
310 95 0.13
311 33 0.04
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (307 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCAATTGGAACACTTGTTATTTTGGGCCTATGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGA
TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
AGTGACGTATTGAATAGTCTTCGATTTGGCAAACCTCAATGCTTTTC
Found at i:109072 original size:52 final size:53
Alignment explanation
Indices: 108994--109099 Score: 187
Period size: 52 Copynumber: 2.0 Consensus size: 53
108984 GATGCTTTTC
* *
108994 TTTCCATTGTTTATGGCCTAACTATAATCA-TTTTGGTGAGATTAGTCTACTG
1 TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTG
109046 TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTG
1 TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTG
109099 T
1 T
109100 GAAGTTTTTA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 30 0.59
53 21 0.41
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (53 bp):
TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTG
Found at i:109221 original size:208 final size:205
Alignment explanation
Indices: 108841--109254 Score: 634
Period size: 208 Copynumber: 2.0 Consensus size: 205
108831 GATGCTTTTC
* ** *
108841 TTTCCATTGTTTATGGCCTAACTATTATCATTTTTGTGTGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * *
108906 TCATTTGGAACACTTGTTATATTGGGCCTTTCGGGGCCCATTAGTGCGTTTTGAATCGTATTCGA
66 TCATTCGGAACACTTGTTATATTGGGCCTTTCGGGACACATTAGTCCGATTTGAATCGTATTCGA
*
108971 TCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
131 TCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
*
109036 TAGTCTACTG
196 TAGTCCACTG
109046 TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCA-TTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAG
* *
109111 CTACATTCGGAACACTTGTTATTTTGGGCCTATT-GGGACACATTAGTTCCGATTTGAATCGTCT
65 CT-CATTCGGAACACTTGTTATATTGGGCCT-TTCGGGACACATTAG-TCCGATTTGAATCGT-A
* *
109175 TTCGATTTGGCAAACCTCAATGCTTTTC-TTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
126 TTCGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
109239 GAGATTAGTCCACTG
191 GAGATTAGTCCACTG
109254 T
1 T
109255 GAAGTTTTTA
Statistics
Matches: 189, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
205 29 0.15
206 33 0.17
207 36 0.19
208 66 0.35
209 25 0.13
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (205 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTCGGAACACTTGTTATATTGGGCCTTTCGGGACACATTAGTCCGATTTGAATCGTATTCGA
TCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
TAGTCCACTG
Found at i:109349 original size:361 final size:358
Alignment explanation
Indices: 108686--109649 Score: 1637
Period size: 361 Copynumber: 2.7 Consensus size: 358
108676 AATGCTTTTC
* *
108686 TTTCCATTGTTTATGGCCTAACCATAATCAGTTTGGTGAGAGTAGTCCACTCGTGAAGTTTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCA-TTTGGTGAGATTAGTCCACT-GTGAAGTTTTTAG
* *
108751 CTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC-TT
64 CTCATTTGGAACACTTGTTATTTTGGGCCTAT-TGGGACCATTAGTGACGTTTTGAATCGTCTTT
* * * * *
108815 CGATTTGGCGAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATTATCATTTTTGTGT
128 CGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
*
108880 GATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATATTGGGCCTTTCGGGGCCC
193 GATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCC
*
108945 ATTAGTGCGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGG
258 ATTAGTGCGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCAATGTTTATGG
*
109010 CCTAACTATAATCATTTTGGTGAGATTAGTCTACTG
323 CCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
109046 TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCA-TTT-GGTGAGATTAGTCCACTGTGAAGTTTTTAG
* ** *
109111 CTACATTCGGAACACTTGTTATTTTGGGCCTATTGGGACACATTAGTTCCGATTTGAATCGTCTT
64 CT-CATTTGGAACACTTGTTATTTTGGGCCTATTGGGAC-CATTAGTGACGTTTTGAATCGTCTT
109176 TCGATTTGGCAAACCTCAATGCTTTTC-TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG
127 TCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTG
* * *
109240 AGATTAGTCCACTGTGAAGTTTTTAGCCCTTTTAGAACACTTGTTATTTTGGGCCTTTCGGGGCC
192 AGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCC
109305 CATTAGTGCGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCAATGTTTATG
257 CATTAGTGCGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCAATGTTTATG
109370 GCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
322 GCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
*
109407 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCA-TTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
109472 TCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGACCATTAGTGACGTTTTGAATCGT-TTTC
65 TCATTTGGAACACTTGTTATTTTGGGCCTATT-GGGACCATTAGTGACGTTTTGAATCGTCTTTC
109536 GATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
129 GATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
*
109601 ATTAGTCCACTGTGAAGTTTTTAGCTCATTGGGAACACTTGTTATTTTG
194 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG
Statistics
Matches: 568, Mismatches: 30, Indels: 13
0.93 0.05 0.02
Matches are distributed among these distances:
358 29 0.05
359 133 0.23
360 87 0.15
361 293 0.52
362 26 0.05
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (358 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT
CATTTGGAACACTTGTTATTTTGGGCCTATTGGGACCATTAGTGACGTTTTGAATCGTCTTTCGA
TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATT
AGTGCGTTTTGAATCGTATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCAATGTTTATGGCCT
AACTATAATCATTTTGGTGAGATTAGTCCACTG
Found at i:109377 original size:153 final size:156
Alignment explanation
Indices: 109046--109407 Score: 545
Period size: 153 Copynumber: 2.3 Consensus size: 156
109036 TAGTCTACTG
*
109046 TTTCCATTGTTTATGGCCTAACTATAATCACTTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCA-TTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG
* *
109111 CTACATTCGGAACACTTGTTATTTTGGGCCTATTGGGACACATTAGTTCCGATTTGAATCGTCTT
65 CTACATTCAGAACACTTGTTATTTTGGGCCTATTGGGACACATTAGTTCCGATTTGAATCGTCAT
* *
109176 TCGATTTGGCAAACCTCAATGCTTTTC
130 TCGATCTGGCAAACCCCAATGCTTTTC
109203 -TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * * * *
109267 -CCTTTTAGAACACTTGTTATTTTGGGCCT-TTCGGGGCCCATTAG-TGCGTTTTGAATCGT-AT
66 TACATTCAGAACACTTGTTATTTTGGGCCTATT-GGGACACATTAGTTCCGATTTGAATCGTCAT
*
109328 TCGATCTGGCAAACCCCGATGCTTTTC
130 TCGATCTGGCAAACCCCAATGCTTTTC
*
109355 TTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
109408 TTCCATTGTT
Statistics
Matches: 189, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
152 25 0.13
153 66 0.35
154 35 0.19
155 34 0.18
156 29 0.15
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.40
Consensus pattern (156 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TACATTCAGAACACTTGTTATTTTGGGCCTATTGGGACACATTAGTTCCGATTTGAATCGTCATT
CGATCTGGCAAACCCCAATGCTTTTC
Found at i:109433 original size:52 final size:52
Alignment explanation
Indices: 109355--109455 Score: 193
Period size: 52 Copynumber: 1.9 Consensus size: 52
109345 GATGCTTTTC
109355 TTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
1 TTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
*
109407 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
1 TTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
109456 TTGTGAAGTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.42
Consensus pattern (52 bp):
TTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTG
Found at i:109453 original size:205 final size:206
Alignment explanation
Indices: 109203--109613 Score: 709
Period size: 205 Copynumber: 2.0 Consensus size: 206
109193 AATGCTTTTC
109203 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCC
1 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCC
* *
109268 CTTTTAGAACACTTGTTATTTTGGGCCT-TTCGGGGCCCATTAGTG-CGTTTTGAATCGTATTCG
66 CATTTAGAACACTTGTTATTTTGGGCCTATT-GGGGACCATTAGTGACGTTTTGAATCGTATTCG
*
109331 ATCTGGCAAACCCCGATGCTTTTCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGA
130 ATCTGGCAAACCCCAATGCTTTTCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGA
109396 TTAGTCCACTGT
195 TTAGTCCACTGT
* *
109408 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCT
1 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCC
* *
109473 CATTTGGAACACTTGTTATTTTGGGCCTATTGGGGACCATTAGTGACGTTTTGAATCGTTTTCGA
66 CATTTAGAACACTTGTTATTTTGGGCCTATTGGGGACCATTAGTGACGTTTTGAATCGTATTCGA
* * *
109538 TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
131 TCTGGCAAACCCCAATGCTTTTCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
109603 TAGTCCACTGT
196 TAGTCCACTGT
109614 GAAGTTTTTA
Statistics
Matches: 194, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
205 102 0.53
206 92 0.47
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.41
Consensus pattern (206 bp):
TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCC
CATTTAGAACACTTGTTATTTTGGGCCTATTGGGGACCATTAGTGACGTTTTGAATCGTATTCGA
TCTGGCAAACCCCAATGCTTTTCTTTCCAATGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
TAGTCCACTGT
Done.