Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000133.1 Corchorus olitorius cultivar O-4 contig00133, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 869

Length: 1449
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:532 original size:17 final size:17

Alignment explanation


    Indices: 510--543  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        500 GTGAAATGAG

                  *          
        510 TCGGGTTACTCGGTTTT
          1 TCGGGTCACTCGGTTTT

                    *        
        527 TCGGGTCATTCGGTTTT
          1 TCGGGTCACTCGGTTTT

        544 GAAAGTCGGT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.06, C:0.18, G:0.29, T:0.47


Consensus pattern (17 bp):   
TCGGGTCACTCGGTTTT
Done.