Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013300.1 Corchorus olitorius cultivar O-4 contig13333, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26145

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
454--510
25
2.4
24
85
5
71
59
1
5
33
1.30
626--680
16
3.5
16
73
14
51
38
30
21
9
1.85
1536--1565
2
15.0
2
100
0
60
50
0
0
50
1.00
2708--2734
3
9.0
3
100
0
54
33
0
33
33
1.58
2914--2943
2
15.0
2
100
0
60
50
0
0
50
1.00
11287--11333
11
4.7
10
80
17
53
40
6
21
31
1.78
11298--11333
19
1.9
18
88
5
54
41
2
22
33
1.68
23590--23628
17
2.3
17
90
0
60
7
17
0
74
1.05
23598--23644
15
3.0
17
79
20
66
6
14
0
78
0.93
23589--23642
8
7.0
8
78
16
51
9
16
0
74
1.07

Tables:   1

The End!