genome.fa.s13301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013301.1 Corchorus olitorius cultivar O-4 contig13334, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28017

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145--243	27	3.6	27	86	2	126	37	25	16	21	1.93
631--706	28	2.6	28	83	4	89	21	15	27	35	1.94
5030--5142	35	3.2	36	75	16	137	26	25	21	26	1.99
5066--5492	35	12.2	35	87	4	564	28	23	19	29	1.98
5485--5645	54	3.0	54	85	0	198	34	21	16	27	1.95
5525--5655	53	2.4	53	85	2	181	33	21	16	28	1.95
5694--5833	50	2.8	50	83	2	183	35	20	15	29	1.93
6028--6088	25	2.4	25	80	0	77	39	16	22	21	1.92
6144--6512	35	10.5	35	78	7	309	43	20	17	18	1.88
6149--6512	71	5.2	69	80	7	292	43	20	17	18	1.88
6222--6408	71	2.6	71	91	0	302	44	19	17	18	1.86
6152--6512	105	3.4	104	80	6	345	43	20	18	18	1.88
8328--8381	26	2.1	26	82	6	65	33	20	5	40	1.76
9553--9695	43	3.3	44	84	8	181	41	9	22	26	1.83
11622--11669	15	3.1	15	81	6	51	8	16	0	75	1.04
11622--11667	8	5.8	8	84	7	58	8	17	0	73	1.07
14997--15089	27	3.4	27	85	2	123	41	26	11	19	1.86
15003--15088	28	3.1	28	88	3	129	39	29	12	18	1.88
16085--16238	52	3.0	52	90	0	227	28	15	19	36	1.92
17453--17587	47	2.9	47	92	1	218	38	10	11	40	1.75
17599--17763	60	2.8	60	90	0	276	33	20	19	27	1.96
17595--17762	31	5.5	31	67	16	127	32	20	19	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17803--17968	31	5.5	29	72	16	115	25	18	20	35	1.95
17830--17933	29	3.5	29	74	14	104	25	17	20	36	1.94
17803--17964	60	2.7	60	91	1	254	24	18	20	36	1.95
26696--26757	27	2.2	29	85	5	83	14	19	30	35	1.92

Tables:   1

The End!