Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013302.1 Corchorus olitorius cultivar O-4 contig13335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42915
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:1545 original size:20 final size:21
Alignment explanation
Indices: 1515--1553 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
1505 CTTACATAGG
1515 ATTACTGAAAAGGCTATACAT
1 ATTACTGAAAAGGCTATACAT
*
1536 ATTA-TGAAAATGCTATAC
1 ATTACTGAAAAGGCTATAC
1554 TCTTATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (21 bp):
ATTACTGAAAAGGCTATACAT
Found at i:1611 original size:23 final size:23
Alignment explanation
Indices: 1579--1626 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
1569 CAATATTCTA
*
1579 GTTTCCTTTCATCAATAATAAAG
1 GTTTCATTTCATCAATAATAAAG
*
1602 GTTTCATTTCGTCAATAATAAAG
1 GTTTCATTTCATCAATAATAAAG
1625 GT
1 GT
1627 AATTACAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (23 bp):
GTTTCATTTCATCAATAATAAAG
Found at i:3245 original size:21 final size:21
Alignment explanation
Indices: 3221--3360 Score: 81
Period size: 21 Copynumber: 6.6 Consensus size: 21
3211 TATTTTTATG
3221 AAATTTTGATAACTACCTATT
1 AAATTTTGATAACTACCTATT
* *
3242 AAATTTTGATAATTACCTATA
1 AAATTTTGATAACTACCTATT
* **
3263 AAATTGTGATAAACT-CCATAAG
1 AAATTTTGAT-AACTACC-TATT
* * *
3285 AAACTTTGATAACCTAACTATG
1 AAATTTTGATAA-CTACCTATT
* *
3307 AAATTTTAATAAACTTTCCTA-T
1 AAATTTTGAT-AAC-TACCTATT
* *
3329 GAATTTTG-TAACCTTCCTATT
1 AAATTTTGATAA-CTACCTATT
*
3350 -ATTTTTGATAA
1 AAATTTTGATAA
3361 TCTCTCTGTG
Statistics
Matches: 92, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
20 14 0.15
21 38 0.41
22 33 0.36
23 7 0.08
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.41
Consensus pattern (21 bp):
AAATTTTGATAACTACCTATT
Found at i:6133 original size:26 final size:27
Alignment explanation
Indices: 6074--6134 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
6064 CTAAATTTCC
6074 ATTATTTTAATAATGGAATAATTAAAAT
1 ATTA-TTTAATAATGGAATAATTAAAAT
* *
6102 ATTATTTAGTAATGGCA-AATTAGAAAT
1 ATTATTTAATAATGGAATAATTA-AAAT
6129 A-TATTT
1 ATTATTT
6135 GAAAAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.33
27 16 0.53
28 4 0.13
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.43
Consensus pattern (27 bp):
ATTATTTAATAATGGAATAATTAAAAT
Found at i:6283 original size:22 final size:22
Alignment explanation
Indices: 6254--6375 Score: 97
Period size: 22 Copynumber: 5.5 Consensus size: 22
6244 TGAATATTTT
6254 TATGAAATTTTGATATCTACCC
1 TATGAAATTTTGATATCTACCC
* * * *
6276 TATTAAATTTTGATAACCACGC
1 TATGAAATTTTGATATCTACCC
*
6298 TATGAAATTTTGATAATTTA-CC
1 TATGAAATTTTGAT-ATCTACCC
* * *
6320 TATGAAATTGTGATAAACT-CCA
1 TATGAAATTTTGAT-ATCTACCC
* **
6342 TATGAAACTTTGATAATCTA-AA
1 TATGAAATTTTGAT-ATCTACCC
6364 TATGAAATTTTG
1 TATGAAATTTTG
6376 TAACCTTTTA
Statistics
Matches: 79, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
22 77 0.97
23 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (22 bp):
TATGAAATTTTGATATCTACCC
Found at i:6322 original size:44 final size:44
Alignment explanation
Indices: 6254--6380 Score: 143
Period size: 44 Copynumber: 2.9 Consensus size: 44
6244 TGAATATTTT
*
6254 TATGAAATTTTGAT-ATCTACCCTATTAAATTTTGATAACCACGC-
1 TATGAAATTTTGATAATCTA-CCTATGAAATTTTGATAACCAC-CA
* * * *
6298 TATGAAATTTTGATAATTTACCTATGAAATTGTGATAAACTCCA
1 TATGAAATTTTGATAATCTACCTATGAAATTTTGATAACCACCA
* **
6342 TATGAAACTTTGATAATCTAAATATGAAATTTTG-TAACC
1 TATGAAATTTTGATAATCTACCTATGAAATTTTGATAACC
6381 TTTTAAGATT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
43 5 0.07
44 61 0.87
45 4 0.06
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39
Consensus pattern (44 bp):
TATGAAATTTTGATAATCTACCTATGAAATTTTGATAACCACCA
Found at i:6437 original size:22 final size:22
Alignment explanation
Indices: 6384--6441 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
6374 TGTAACCTTT
6384 TAAGATTTTTGATAACCTCCCTA
1 TAAG-TTTTTGATAACCTCCCTA
* * * *
6407 TGAGATTTTGTTAATCTCCCTA
1 TAAGTTTTTGATAACCTCCCTA
*
6429 TAATTTTTTGATA
1 TAAGTTTTTGATA
6442 TTATAGTATG
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
22 24 0.89
23 3 0.11
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.47
Consensus pattern (22 bp):
TAAGTTTTTGATAACCTCCCTA
Found at i:6691 original size:28 final size:30
Alignment explanation
Indices: 6639--6711 Score: 96
Period size: 28 Copynumber: 2.5 Consensus size: 30
6629 TACCCAGAAA
*
6639 AATCCCTTATGTTTTACTTTTGGGACAAAAT
1 AATCCCTTATGTTTTA-TTTCGGGACAAAAT
*
6670 AATCCCTTAT-TTTT-TTTCGGGACAAATT
1 AATCCCTTATGTTTTATTTCGGGACAAAAT
*
6698 AATCCCTTACGTTT
1 AATCCCTTATGTTT
6712 CAAAAATGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 21 0.55
29 3 0.08
30 4 0.11
31 10 0.26
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.44
Consensus pattern (30 bp):
AATCCCTTATGTTTTATTTCGGGACAAAAT
Found at i:6902 original size:31 final size:31
Alignment explanation
Indices: 6864--6945 Score: 139
Period size: 31 Copynumber: 2.7 Consensus size: 31
6854 TTTGTCCCAA
*
6864 AAAAACATAAGGGATTTTTTTGTCCCAAAAG
1 AAAAACATAAGGGATTTTTTTGTCCAAAAAG
6895 AAAAACATAAGGGATTTTTTTGTCCAAAAAG
1 AAAAACATAAGGGATTTTTTTGTCCAAAAAG
*
6926 AAAAACATTAGGG-TTTTTTT
1 AAAAACATAAGGGATTTTTTT
6946 AAGTATTTAG
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 7 0.14
31 42 0.86
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (31 bp):
AAAAACATAAGGGATTTTTTTGTCCAAAAAG
Found at i:8199 original size:31 final size:29
Alignment explanation
Indices: 8133--8212 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
8123 CTCAATTTTG
* * * *
8133 AAACGTAAGGGATTAATTTGTCGCGAAAA
1 AAACATAAGGGATTATTTTGTCCCAAAAA
8162 AAACATAAGGGATTATTTTGTCCCAAAAGCA
1 AAACATAAGGGATTATTTTGTCCCAAAA--A
*
8193 AAACATAAGGGATTTTTTTG
1 AAACATAAGGGATTATTTTG
8213 GGTATTTAGC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 24 0.55
31 20 0.45
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (29 bp):
AAACATAAGGGATTATTTTGTCCCAAAAA
Found at i:10837 original size:2 final size:2
Alignment explanation
Indices: 10793--10817 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10783 TTCGTACTTT
10793 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10818 GAAAGGTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11476 original size:179 final size:178
Alignment explanation
Indices: 11204--11529 Score: 469
Period size: 179 Copynumber: 1.8 Consensus size: 178
11194 CCAATTAAGG
* * * * *
11204 TGATTTAAGTGTCTATTAAAAGATTGTTCCATGATTTATAACTTTCATGACGGACTTGAAAACTA
1 TGATTCAAGTGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACTA
*
11269 AATTTAATGTTTCAAGTATCAAAAATGCTTCCGAAA-AATTTGTTGTTTCACTTAACGGGAAATA
66 AATTTAATGTTTCAAGTATCAAAAATGCTTCC-AAAGAATTAGTTGTTTCACTTAAC-GGAAATA
*
11333 GACGGTCCACTTAATATTATATAACTTTTACTCCAGATGTCTGATTGAGA
129 GACGGTCCACTCAATATTATATAACTTTTACTCCAGATGTCTGATTGAGA
* * * *
11383 TGATTCAAGTGTCTTTTGAAAGGTTGTTCCATGATCTACAACTTTCATTAAGGACTCGAAAACTA
1 TGATTCAAGTGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACTA
**
11448 AATTTAATG-TTCAAGGTAT-AACAAATGCTTCCAAAGAATTAGTTGTTTCGGTTAACGGAAATA
66 AATTTAATGTTTCAA-GTATCAA-AAATGCTTCCAAAGAATTAGTTGTTTCACTTAACGGAAATA
*
11511 GACGGTCTACTCAATATTA
129 GACGGTCCACTCAATATTA
11530 CTTAATTTGT
Statistics
Matches: 130, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
178 34 0.26
179 96 0.74
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (178 bp):
TGATTCAAGTGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACTA
AATTTAATGTTTCAAGTATCAAAAATGCTTCCAAAGAATTAGTTGTTTCACTTAACGGAAATAGA
CGGTCCACTCAATATTATATAACTTTTACTCCAGATGTCTGATTGAGA
Found at i:21199 original size:26 final size:26
Alignment explanation
Indices: 21131--21201 Score: 92
Period size: 26 Copynumber: 2.7 Consensus size: 26
21121 AAAGTCGTTT
*
21131 AGGGGCATTTTGGTCAATTGTACTTC
1 AGGGGCATTTTGGTCATTTGTACTTC
21157 AGGGGCATTTTGGTCATTTGCATA-TTC
1 AGGGGCATTTTGGTCATTTG--TACTTC
*
21184 A-GGGTATTTTGGTCATTT
1 AGGGGCATTTTGGTCATTT
21202 TAAGTCCACT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 35 0.85
27 4 0.10
28 2 0.05
ACGTcount: A:0.18, C:0.13, G:0.27, T:0.42
Consensus pattern (26 bp):
AGGGGCATTTTGGTCATTTGTACTTC
Found at i:22918 original size:24 final size:24
Alignment explanation
Indices: 22865--22920 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
22855 TCATTCTCTC
*
22865 CTCACACAAAAAGAAAAGCAACCT
1 CTCACACAAAAAGAAAAACAACCT
**
22889 CTCACACAAAAA-AAAAACTCCCT
1 CTCACACAAAAAGAAAAACAACCT
22912 CTCCACACA
1 CT-CACACA
22921 CAGGAATACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 10 0.36
24 18 0.64
ACGTcount: A:0.50, C:0.36, G:0.04, T:0.11
Consensus pattern (24 bp):
CTCACACAAAAAGAAAAACAACCT
Found at i:23490 original size:10 final size:10
Alignment explanation
Indices: 23475--23500 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
23465 AGGGTTTCAG
23475 GAAGGAAGAA
1 GAAGGAAGAA
23485 GAAGGAAGAA
1 GAAGGAAGAA
23495 GAAGGA
1 GAAGGA
23501 GAAAAGGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (10 bp):
GAAGGAAGAA
Found at i:28785 original size:21 final size:21
Alignment explanation
Indices: 28759--28824 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 21
28749 CCGAAATTCC
*
28759 TTGCTTGCCTTT-GTCGACGAT
1 TTGCTT-CCTTTGGTCGACAAT
*
28780 TTGCTTCCTCTTGAGTCGAAAAT
1 TTGCTTCCT-TTG-GTCGACAAT
28803 TTGCTTCCTTTGGTCGACAAT
1 TTGCTTCCTTTGGTCGACAAT
28824 T
1 T
28825 CCCTAGTCGA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.08
21 17 0.44
22 3 0.08
23 16 0.41
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.42
Consensus pattern (21 bp):
TTGCTTCCTTTGGTCGACAAT
Found at i:37226 original size:19 final size:18
Alignment explanation
Indices: 37193--37228 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
37183 TTGAAATTAT
37193 TCTTCAATGGTCTTCAAA
1 TCTTCAATGGTCTTCAAA
*
37211 TCTTCAAATTGTCTTCAA
1 TCTTC-AATGGTCTTCAA
37229 TAAGTCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (18 bp):
TCTTCAATGGTCTTCAAA
Found at i:41327 original size:71 final size:71
Alignment explanation
Indices: 41051--41505 Score: 443
Period size: 71 Copynumber: 6.4 Consensus size: 71
41041 GATGCCTCAG
* * * * *
41051 TTCATTTCAGTTGACCCAGGGCGGTCTTTATTTAGTTTATTTCAG-TTCATCCAGGGCGATCTTT
1 TTCATTTCAGTTGACCCAGGGCGGTCCTTATTCAATTTATTTCAGTTTGATCCAGGGCGATCCTT
* *
41115 CTTCAG
66 ATTCAA
* * * * * * *
41121 TTAATTTCTGTTGACCCAGGGCGGTCTTTCTTCAATTCATTTCAG-TTGACCCAGGGTGATCCTT
1 TTCATTTCAGTTGACCCAGGGCGGTCCTTATTCAATTTATTTCAGTTTGATCCAGGGCGATCCTT
41185 ATTCAA
66 ATTCAA
* * * * * *
41191 TTCATTTCAGTTTGATCCAGGGCGATCTTTTCTTCAGTTTATTTC-GATTTGATCCAGGGCTATC
1 TTCATTTCAG-TTGACCCAGGGCGGTC-CTTATTCAATTTATTTCAG-TTTGATCCAGGGCGATC
41255 CTTATTCAA
63 CTTATTCAA
* * *
41264 TTCATTTCAGTTGACCCAGGGTGGTCCTTATTCAGTTTATTTCAGTTTGATCTAGGGCGATCCTT
1 TTCATTTCAGTTGACCCAGGGCGGTCCTTATTCAATTTATTTCAGTTTGATCCAGGGCGATCCTT
41329 ATTCAA
66 ATTCAA
* * *
41335 TTCATTTCAGTTGACCCAAGGTGGTCCTTATTCAATTTATTTCAGTTTGATCCAGGGCGATCTTT
1 TTCATTTCAGTTGACCCAGGGCGGTCCTTATTCAATTTATTTCAGTTTGATCCAGGGCGATC-CT
* *
41400 TCTTCAT
65 TATTCAA
* * * * * *
41407 TTTACTTT-AGTTGATCCAGGGCGAT-CTTTTCCTCAATTTACTTCAATTTGATCCAGGGCGATC
1 TTCA-TTTCAGTTGACCCAGGGCGGTCCTTAT--TCAATTTATTTCAGTTTGATCCAGGGCGATC
* * *
41470 TTTTCTTCAG
63 -CTTATTCAA
* * *
41480 TTTATTTCAGCTGACCCAGGGTGGTC
1 TTCATTTCAGTTGACCCAGGGCGGTC
41506 TTTCCCTTAA
Statistics
Matches: 327, Mismatches: 47, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
70 66 0.20
71 117 0.36
72 54 0.17
73 90 0.28
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.41
Consensus pattern (71 bp):
TTCATTTCAGTTGACCCAGGGCGGTCCTTATTCAATTTATTTCAGTTTGATCCAGGGCGATCCTT
ATTCAA
Found at i:41365 original size:179 final size:177
Alignment explanation
Indices: 41089--41562 Score: 486
Period size: 179 Copynumber: 2.6 Consensus size: 177
41079 TATTTAGTTT
* * * * * * *
41089 ATTTCAGTTCATCCAGGGCGATCTTTCTTCAGTTAATTTCTGTTGACCCAGGGCGGTCTTTCTTC
1 ATTTCAGTTCACCCAGGGCGATCCTTATTCAGTTAATTTCAGTTGACCCAGGGCGATCCTTATTC
*
41154 AATTCATTTCAGTTGACCCAGGGTGATCCTTATTCAATTCATTTCAGTTTGATCCAGGGCGATCT
66 AATTCATTTCAGTTGACCCAAGGTGATCCTTATTCAATTCATTTCAGTTTGATCCAGGGCGATCT
*
41219 TTTCTTCAGTTTA-TTTCGATTTGATCCAGGGCTATCCTTATTCAATTC
131 TTTCTTCAGTTTACTTT--AGTTGATCCAGGGCTATCCTTATTCAATTC
* * * * * *
41267 ATTTCAGTTGACCCAGGGTGGTCCTTATTCAGTTTATTTCAGTTTGATCTAGGGCGATCCTTATT
1 ATTTCAGTTCACCCAGGGCGATCCTTATTCAGTTAATTTCAG-TTGACCCAGGGCGATCCTTATT
* *
41332 CAATTCATTTCAGTTGACCCAAGGTGGTCCTTATTCAATTTATTTCAGTTTGATCCAGGGCGATC
65 CAATTCATTTCAGTTGACCCAAGGTGATCCTTATTCAATTCATTTCAGTTTGATCCAGGGCGATC
* * * *
41397 TTTTCTTCATTTTACTTTAGTTGATCCAGGGCGAT-CTTTTCCTCAATTT
130 TTTTCTTCAGTTTACTTTAGTTGATCCAGGGCTATCCTTAT--TCAATTC
* * * * * * * * * * *
41446 ACTTCAATTTGATCCAGGGCGATCTTTTCTTCAGTTTATTTCAGCTGACCCAGGGTGGTCTTTCC
1 ATTTC-AGTTCACCCAGGGCGATC-CTTATTCAGTTAATTTCAGTTGACCCAGGGCGATCCTT--
* * * * * * * *
41511 CTT-AATTCATTTCAGCTGACCTAGGGTGGTCTTTCTTCAGTTCATTTCAGTT
62 ATTCAATTCATTTCAGTTGACCCAAGGTGATCCTTATTCAATTCATTTCAGTT
41563 GACCTAGTGA
Statistics
Matches: 246, Mismatches: 42, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
177 4 0.02
178 49 0.20
179 102 0.41
180 30 0.12
181 59 0.24
182 2 0.01
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.42
Consensus pattern (177 bp):
ATTTCAGTTCACCCAGGGCGATCCTTATTCAGTTAATTTCAGTTGACCCAGGGCGATCCTTATTC
AATTCATTTCAGTTGACCCAAGGTGATCCTTATTCAATTCATTTCAGTTTGATCCAGGGCGATCT
TTTCTTCAGTTTACTTTAGTTGATCCAGGGCTATCCTTATTCAATTC
Found at i:41508 original size:36 final size:35
Alignment explanation
Indices: 41051--41566 Score: 397
Period size: 35 Copynumber: 14.5 Consensus size: 35
41041 GATGCCTCAG
* * * *
41051 TTCATTTCAGTTGACCCAGGGCGGTCTTTATTTAG
1 TTCATTTCAGTTGACCCAGGGCGATCTTTCTTCAA
* * * *
41086 TTTATTTCAGTTCATCCAGGGCGATCTTTCTTCAG
1 TTCATTTCAGTTGACCCAGGGCGATCTTTCTTCAA
* * *
41121 TTAATTTCTGTTGACCCAGGGCGGTCTTTCTTCAA
1 TTCATTTCAGTTGACCCAGGGCGATCTTTCTTCAA
* * *
41156 TTCATTTCAGTTGACCCAGGGTGATCCTTATTCAA
1 TTCATTTCAGTTGACCCAGGGCGATCTTTCTTCAA
* *
41191 TTCATTTCAGTTTGATCCAGGGCGATCTTTTCTTCAG
1 TTCATTTCAG-TTGACCCAGGGCGATC-TTTCTTCAA
* * * * * *
41228 TTTATTTCGATTTGATCCAGGGCTATCCTTATTCAA
1 TTCATTTC-AGTTGACCCAGGGCGATCTTTCTTCAA
* * * * *
41264 TTCATTTCAGTTGACCCAGGGTGGTCCTTATTCAG
1 TTCATTTCAGTTGACCCAGGGCGATCTTTCTTCAA
* * * * *
41299 TTTATTTCAGTTTGATCTAGGGCGATCCTTATTCAA
1 TTCATTTCAG-TTGACCCAGGGCGATCTTTCTTCAA
* * * * *
41335 TTCATTTCAGTTGACCCAAGGTGGTCCTTATTCAA
1 TTCATTTCAGTTGACCCAGGGCGATCTTTCTTCAA
* * *
41370 TTTATTTCAGTTTGATCCAGGGCGATCTTTTCTTCAT
1 TTCATTTCAG-TTGACCCAGGGCGATC-TTTCTTCAA
* * *
41407 TTTACTTT-AGTTGATCCAGGGCGATCTTTTCCTCAA
1 TTCA-TTTCAGTTGACCCAGGGCGATC-TTTCTTCAA
* * * * *
41443 TTTACTTCAATTTGATCCAGGGCGATCTTTTCTTCAG
1 TTCATTTC-AGTTGACCCAGGGCGATC-TTTCTTCAA
* * * *
41480 TTTATTTCAGCTGACCCAGGGTGGTCTTTCCCTT-AA
1 TTCATTTCAGTTGACCCAGGGCGATCTTT--CTTCAA
* * * * *
41516 TTCATTTCAGCTGACCTAGGGTGGTCTTTCTTCAG
1 TTCATTTCAGTTGACCCAGGGCGATCTTTCTTCAA
41551 TTCATTTCAGTTGACC
1 TTCATTTCAGTTGACC
41567 TAGTGATACG
Statistics
Matches: 396, Mismatches: 73, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
34 3 0.01
35 177 0.45
36 137 0.35
37 75 0.19
38 4 0.01
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.41
Consensus pattern (35 bp):
TTCATTTCAGTTGACCCAGGGCGATCTTTCTTCAA
Done.