Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013306.1 Corchorus olitorius cultivar O-4 contig13339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26206

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6610--6637
3
9.3
3
100
0
56
67
32
0
0
0.91
9044--9079
18
2.0
18
100
0
72
27
11
27
33
1.91
13400--13688
40
7.3
39
85
5
350
40
19
26
12
1.87
13657--13796
48
2.9
48
92
2
217
36
18
26
18
1.94
14169--14269
51
2.0
50
86
5
141
34
15
5
43
1.72
14271--14432
51
3.2
51
88
3
236
35
14
8
41
1.76
14568--14672
51
2.1
51
89
3
158
41
12
6
39
1.69
14839--14879
20
2.0
20
85
0
55
0
34
0
65
0.93
19230--19293
31
2.1
31
90
0
101
50
20
17
12
1.78
23912--23955
21
2.1
21
100
0
88
52
18
4
25
1.64
24172--24209
19
2.0
19
89
0
58
42
34
7
15
1.76
24303--24368
31
2.1
31
97
0
123
37
34
12
15
1.84
24311--24378
31
2.2
31
86
0
91
45
33
8
11
1.72
24272--24410
73
1.9
73
88
5
210
41
33
11
12
1.80
24336--24452
42
2.8
42
100
0
234
42
31
12
12
1.81
25447--25491
22
2.0
22
95
0
81
11
33
0
55
1.35

Tables:   1

The End!