Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001331.1 Corchorus olitorius cultivar O-4 contig01331, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1290
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:121 original size:26 final size:28

Alignment explanation


    Indices: 92--158  Score: 93
    Period size: 26  Copynumber: 2.5  Consensus size: 28

         82 CTGAATATGC

                               *        
         92 AAATGACCAAAATACC-CTTAATGT-AA
          1 AAATGACCAAAATACCACTGAATGTGAA

                     *   *              
        118 AAATGACCATAATTCCACTGAATGTGAA
          1 AAATGACCAAAATACCACTGAATGTGAA

                         
        146 AAATGACCAAAAT
          1 AAATGACCAAAAT

        159 GCCCCTTGAG


Statistics
Matches: 35,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  26   14  0.40
  27    7  0.20
  28   14  0.40

ACGTcount: A:0.49, C:0.18, G:0.10, T:0.22


Consensus pattern (28 bp):   
AAATGACCAAAATACCACTGAATGTGAA

Done.