Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013311.1 Corchorus olitorius cultivar O-4 contig13344, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30536

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5416--5449
17
2.0
17
94
0
59
38
20
11
29
1.88
5411--5456
17
2.4
19
75
20
51
32
26
10
30
1.90
6802--6872
29
2.4
31
81
9
85
25
14
26
33
1.94
8747--8791
10
4.4
10
86
5
54
68
17
11
2
1.29
10286--10362
38
2.0
38
97
0
145
41
22
15
20
1.90
10698--10732
16
2.2
16
89
0
52
48
14
25
11
1.77
10828--11028
41
4.9
41
82
5
226
36
19
13
29
1.91
10828--11028
85
2.4
82
82
7
244
36
19
13
29
1.91
16146--16181
19
1.9
18
88
5
54
41
8
22
27
1.82
22965--22996
12
2.7
12
95
0
55
53
0
9
37
1.34
24549--24622
28
2.5
29
83
12
89
37
12
29
20
1.89
26405--26435
16
1.9
16
93
0
53
0
16
3
80
0.83
28206--28255
2
25.0
2
80
8
57
44
8
0
48
1.32
28366--28684
116
2.8
115
90
5
488
39
10
3
46
1.55
28652--28702
18
2.7
19
79
11
61
41
5
0
52
1.25
28656--28698
15
2.9
15
83
10
52
44
4
0
51
1.22
29417--29724
154
2.0
154
92
0
517
37
11
9
41
1.73

Tables:   1

The End!