Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013312.1 Corchorus olitorius cultivar O-4 contig13345, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42118

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2394--2717
164
2.0
164
84
4
431
33
18
18
29
1.95
5935--5974
6
6.7
6
100
0
80
30
52
0
17
1.45
6088--6117
6
5.0
6
100
0
60
50
50
0
0
1.00
6281--6307
6
4.5
6
100
0
54
62
18
0
18
1.32
11999--12047
22
2.2
22
81
0
62
53
2
2
42
1.24
12246--12547
148
2.0
150
88
1
455
29
23
20
26
1.99
17567--17606
15
2.6
16
88
4
55
15
10
12
62
1.54
20540--20586
21
2.2
21
84
0
58
17
36
23
23
1.95
23850--23889
15
2.6
16
88
4
55
15
10
12
62
1.54
30270--30483
109
2.0
109
97
0
401
32
10
12
44
1.76
35329--35442
57
2.0
57
94
0
201
38
2
24
34
1.70
36084--36421
178
1.9
178
87
3
502
36
16
14
32
1.89
37035--37067
2
16.5
2
100
0
66
51
0
0
48
1.00
37121--37207
27
3.2
27
85
6
122
18
19
24
37
1.94
39259--39410
69
2.2
70
90
1
234
19
28
24
27
1.99

Tables:   1

The End!