Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001332.1 Corchorus olitorius cultivar O-4 contig01332, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1453
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24


Found at i:1287 original size:28 final size:29

Alignment explanation


    Indices: 1251--1327  Score: 95
    Period size: 28  Copynumber: 2.7  Consensus size: 29

       1241 TTCAAAGTAC

                *      *            *    
       1251 AAGGTTAAAACTGTAAATTTAA-CCTTCT
          1 AAGGGTAAAACGGTAAATTTAATCATTCT

                                         
       1279 AAGGGTAAAACGGT-AATTTAATCATTCT
          1 AAGGGTAAAACGGTAAATTTAATCATTCT

            *               *    
       1307 TAGGGTAAAACGGTAATTTTA
          1 AAGGGTAAAACGGTAAATTTA

       1328 TGCCCATACA


Statistics
Matches: 42,  Mismatches: 5, Indels: 3
        0.84            0.10        0.06

Matches are distributed among these distances:
  27    7  0.17
  28   30  0.71
  29    5  0.12

ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34


Consensus pattern (29 bp):   
AAGGGTAAAACGGTAAATTTAATCATTCT
Done.