Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013321.1 Corchorus olitorius cultivar O-4 contig13354, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48403

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6665--6727
2
32.0
2
81
15
78
52
1
1
44
1.20
6666--6725
18
3.3
18
86
11
86
53
1
1
43
1.20
13083--13113
2
15.5
2
100
0
62
48
0
0
51
1.00
14906--14936
15
2.1
15
93
0
53
48
0
0
51
1.00
14883--14933
19
2.7
18
82
8
66
52
1
0
45
1.12
15287--15311
13
1.9
13
100
0
50
60
24
0
16
1.36
16563--16589
9
3.0
9
100
0
54
55
11
11
22
1.66
32574--32604
15
2.1
15
93
0
53
48
0
0
51
1.00
32551--32601
19
2.7
18
82
8
66
52
1
0
45
1.12
34249--34285
17
2.1
18
85
14
51
37
0
5
56
1.22
34317--34355
19
2.1
19
85
9
53
33
0
0
66
0.92
41831--41898
30
2.3
30
90
5
104
51
16
4
27
1.63

Tables:   1

The End!