Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013326.1 Corchorus olitorius cultivar O-4 contig13359, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8895
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:605 original size:15 final size:15

Alignment explanation


    Indices: 585--614  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        575 AAAATATGTC

                           
        585 ATTTTATTATAATTT
          1 ATTTTATTATAATTT

                    *      
        600 ATTTTATTTTAATTT
          1 ATTTTATTATAATTT

        615 TTATGTTTTA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70


Consensus pattern (15 bp):   
ATTTTATTATAATTT

Found at i:1918 original size:37 final size:37

Alignment explanation


    Indices: 1877--1959  Score: 157
    Period size: 37  Copynumber: 2.2  Consensus size: 37

       1867 GTAATAGTTT

                                            *    
       1877 CTCCTAAAATTTTCTTGAAATCTATTCCACCCGGACA
          1 CTCCTAAAATTTTCTTGAAATCTATTCCACCCAGACA

                                                 
       1914 CTCCTAAAATTTTCTTGAAATCTATTCCACCCAGACA
          1 CTCCTAAAATTTTCTTGAAATCTATTCCACCCAGACA

                     
       1951 CTCCTAAAA
          1 CTCCTAAAA

       1960 ATTCAAGATT


Statistics
Matches: 45,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  37   45  1.00

ACGTcount: A:0.33, C:0.30, G:0.06, T:0.31


Consensus pattern (37 bp):   
CTCCTAAAATTTTCTTGAAATCTATTCCACCCAGACA
Done.