Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013330.1 Corchorus olitorius cultivar O-4 contig13363, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9364
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33


Found at i:7165 original size:72 final size:72

Alignment explanation


    Indices: 7082--7224  Score: 277
    Period size: 72  Copynumber: 2.0  Consensus size: 72

       7072 ATCTAAAGGT

                                                                             
       7082 ATGTAGTTGATTTATGGTATAGTTTCTAGTTTAGGTTGAATTCTCATTTAGATGTTTGGGTATAG
          1 ATGTAGTTGATTTATGGTATAGTTTCTAGTTTAGGTTGAATTCTCATTTAGATGTTTGGGTATAG

                   
       7147 AGATTTC
         66 AGATTTC

                                            *                                
       7154 ATGTAGTTGATTTATGGTATAGTTTCTAGTTTGGGTTGAATTCTCATTTAGATGTTTGGGTATAG
          1 ATGTAGTTGATTTATGGTATAGTTTCTAGTTTAGGTTGAATTCTCATTTAGATGTTTGGGTATAG

                  
       7219 AGATTT
         66 AGATTT

       7225 ATTTGAATTG


Statistics
Matches: 70,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  72   70  1.00

ACGTcount: A:0.23, C:0.05, G:0.24, T:0.48


Consensus pattern (72 bp):   
ATGTAGTTGATTTATGGTATAGTTTCTAGTTTAGGTTGAATTCTCATTTAGATGTTTGGGTATAG
AGATTTC

Found at i:7175 original size:125 final size:125

Alignment explanation


    Indices: 6953--7196  Score: 470
    Period size: 125  Copynumber: 2.0  Consensus size: 125

       6943 TTTATTTGGT

                                                *                            
       6953 AGGTATGTAGTTGATTTATGGTATAGTTTCTAGTTTGGGTTGAATTCTCATTTAGATGTTTGGGT
          1 AGGTATGTAGTTGATTTATGGTATAGTTTCTAGTTTAGGTTGAATTCTCATTTAGATGTTTGGGT

                      *                                                 
       7018 ATAGAGATTTTATGTAGTTGATTTATGGTATAGTTTCTAGTTTGGGTTGAATTCATCTAA
         66 ATAGAGATTTCATGTAGTTGATTTATGGTATAGTTTCTAGTTTGGGTTGAATTCATCTAA

                                                                             
       7078 AGGTATGTAGTTGATTTATGGTATAGTTTCTAGTTTAGGTTGAATTCTCATTTAGATGTTTGGGT
          1 AGGTATGTAGTTGATTTATGGTATAGTTTCTAGTTTAGGTTGAATTCTCATTTAGATGTTTGGGT

                                                                  
       7143 ATAGAGATTTCATGTAGTTGATTTATGGTATAGTTTCTAGTTTGGGTTGAATTC
         66 ATAGAGATTTCATGTAGTTGATTTATGGTATAGTTTCTAGTTTGGGTTGAATTC

       7197 TCATTTAGAT


Statistics
Matches: 117,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 125  117  1.00

ACGTcount: A:0.23, C:0.05, G:0.25, T:0.47


Consensus pattern (125 bp):   
AGGTATGTAGTTGATTTATGGTATAGTTTCTAGTTTAGGTTGAATTCTCATTTAGATGTTTGGGT
ATAGAGATTTCATGTAGTTGATTTATGGTATAGTTTCTAGTTTGGGTTGAATTCATCTAA
Done.