Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013335.1 Corchorus olitorius cultivar O-4 contig13368, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27847

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
500--885
213
1.8
214
85
1
542
32
16
15
35
1.90
2024--2093
35
2.0
34
94
2
122
45
15
15
22
1.84
2877--2975
49
2.0
49
92
0
162
39
17
15
28
1.89
3095--3152
30
1.9
30
93
6
100
37
17
3
41
1.66
9532--9692
30
5.4
30
84
1
189
34
4
37
22
1.76
9529--9717
60
3.2
60
83
3
211
33
6
35
23
1.82
9574--9651
15
5.2
15
68
17
63
33
6
41
19
1.77
9646--10023
96
4.0
95
70
11
299
31
7
33
27
1.84
9838--9981
30
4.8
30
81
0
153
34
4
36
25
1.75
17540--17609
33
2.1
33
97
0
131
30
20
0
50
1.49
21185--21265
42
1.9
42
94
0
144
45
16
8
29
1.77
21331--21445
57
2.0
57
94
1
205
40
0
22
36
1.60
22723--22971
121
2.0
126
88
8
375
49
1
10
38
1.48
25723--25870
76
1.9
76
90
2
235
41
4
15
38
1.66
27242--27279
12
3.1
13
88
7
53
47
0
0
52
1.00
27247--27279
2
17.5
2
87
12
52
48
0
0
51
1.00

Tables:   1

The End!