Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013341.1 Corchorus olitorius cultivar O-4 contig13374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62759
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Found at i:13431 original size:14 final size:15
Alignment explanation
Indices: 13412--13442 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13402 AGATTGTGAC
13412 TTAA-TTAATGAAGT
1 TTAATTTAATGAAGT
13426 TTAATTTAATGAAGT
1 TTAATTTAATGAAGT
13441 TT
1 TT
13443 GTTGGTGCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (15 bp):
TTAATTTAATGAAGT
Found at i:13730 original size:19 final size:19
Alignment explanation
Indices: 13706--13742 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13696 CTGTTTAGCA
*
13706 ACTGTAGAGATGAGATTAC
1 ACTGTACAGATGAGATTAC
*
13725 ACTGTACAGATTAGATTA
1 ACTGTACAGATGAGATTA
13743 GGTATTGTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.30
Consensus pattern (19 bp):
ACTGTACAGATGAGATTAC
Found at i:18096 original size:13 final size:13
Alignment explanation
Indices: 18078--18102 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18068 AAATCCATTC
18078 AGGTAATTCTAAT
1 AGGTAATTCTAAT
18091 AGGTAATTCTAA
1 AGGTAATTCTAA
18103 AATTTTGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
AGGTAATTCTAAT
Found at i:19005 original size:20 final size:20
Alignment explanation
Indices: 18976--19017 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
18966 GGATTGGTCC
* *
18976 TTCCCTTCCTTTCCTCTCCT
1 TTCCCATCCTATCCTCTCCT
*
18996 TTCCCATCCTATCCTGTCCT
1 TTCCCATCCTATCCTCTCCT
19016 TT
1 TT
19018 ACTGATCCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.05, C:0.45, G:0.02, T:0.48
Consensus pattern (20 bp):
TTCCCATCCTATCCTCTCCT
Found at i:25015 original size:13 final size:13
Alignment explanation
Indices: 24997--25022 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24987 TTCGATACCC
24997 CTTGAATAAGGTT
1 CTTGAATAAGGTT
25010 CTTGAATAAGGTT
1 CTTGAATAAGGTT
25023 TTAGATTGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
CTTGAATAAGGTT
Found at i:29518 original size:16 final size:16
Alignment explanation
Indices: 29497--29534 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
29487 CCCAAATTAG
29497 AAACTATACCATAAAT
1 AAACTATACCATAAAT
29513 AAACTATACCATAAAT
1 AAACTATACCATAAAT
29529 AAACTA
1 AAACTA
29535 CCTACCTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (16 bp):
AAACTATACCATAAAT
Found at i:37099 original size:1 final size:1
Alignment explanation
Indices: 37093--37127 Score: 70
Period size: 1 Copynumber: 35.0 Consensus size: 1
37083 GTAAGAAGGG
37093 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
37128 AAGGGAGAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:46835 original size:188 final size:183
Alignment explanation
Indices: 46498--46872 Score: 626
Period size: 188 Copynumber: 2.0 Consensus size: 183
46488 TCTACCAACA
46498 GAGCATGTAAAAGATCTAGATAGCTTTCCTATATTCAGTTCTCCAAGCTAACAAGAAAAAGAGAC
1 GAGCATGTAAAAGATCTAGATAGCTTTCCTATATTCAGTTCTCCAAGCTAACAAG-AAAAGAGAC
* *
46563 CTGTAGTCTTTAGAATACGATAAACTGGTTCTTTTGTTTACCTTATTATATTGTGTTATATCCAT
65 CTGTAGTCTTTAGAATACAATAAACTAGTTCTTTTGTTTACCTTATTATATTGTGTTATATCCAT
46628 TTTCATTTGTGGGGTTAAAAGGGTTTAACAAAGATAACCAAATCTAACATGCAT
130 TTTCATTTGTGGGGTTAAAAGGGTTTAACAAAGATAACCAAATCTAACATGCAT
* * * *
46682 GAGCATGTAAAAGATCTAGATAGCTTTCTTATCTTCATTTCTCCAAGCTAACAAG-AAATAGACC
1 GAGCATGTAAAAGATCTAGATAGCTTTCCTATATTCAGTTCTCCAAGCTAACAAGAAAAGAGACC
46746 TGTAGTCTTTAGAATACAATAAACTAGTTCTTTTGTATTAACTTACCTTATTATATTGTGTTATA
66 TGTAGTCTTTAGAATACAATAAACTAGTTCTTTTG---T---TTACCTTATTATATTGTGTTATA
46811 TCCATTTTCATTTGTGGGGTTAAAAGGGTTTAACAAAGATAACCAAATCTAACATGCAT
125 TCCATTTTCATTTGTGGGGTTAAAAGGGTTTAACAAAGATAACCAAATCTAACATGCAT
46870 GAG
1 GAG
46873 AGAGTGGAAT
Statistics
Matches: 179, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
182 41 0.23
184 52 0.29
185 1 0.01
188 85 0.47
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35
Consensus pattern (183 bp):
GAGCATGTAAAAGATCTAGATAGCTTTCCTATATTCAGTTCTCCAAGCTAACAAGAAAAGAGACC
TGTAGTCTTTAGAATACAATAAACTAGTTCTTTTGTTTACCTTATTATATTGTGTTATATCCATT
TTCATTTGTGGGGTTAAAAGGGTTTAACAAAGATAACCAAATCTAACATGCAT
Found at i:54764 original size:22 final size:21
Alignment explanation
Indices: 54723--54765 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
54713 ATTCATATGA
*
54723 AAATATGATAATCTCCCTATT
1 AAATATGATAATCTCACTATT
54744 AAATAATGATAAT-TACACTATT
1 AAAT-ATGATAATCT-CACTATT
54766 TTTGATGACC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (21 bp):
AAATATGATAATCTCACTATT
Found at i:55013 original size:45 final size:45
Alignment explanation
Indices: 54952--55070 Score: 118
Period size: 45 Copynumber: 2.7 Consensus size: 45
54942 TTGAAGATCT
* * *
54952 CACTATGAAATTTTGATAACTTCCCA-ATGAAATTTTGATAACCAA
1 CACTATGAAATGTTGATAACCT-CCATATGAAATATTGATAACCAA
* *
54997 CACTATGAGATGTTGATAACCTCCATATGATATATTGATAACC-A
1 CACTATGAAATGTTGATAACCTCCATATGAAATATTGATAACCAA
** * * *
55041 CGTTATAAAAT-TTAAAAACCTCCATATGAA
1 CACTATGAAATGTTGATAACCTCCATATGAA
55071 TTGTTAGTAA
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
43 16 0.26
44 11 0.18
45 34 0.56
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (45 bp):
CACTATGAAATGTTGATAACCTCCATATGAAATATTGATAACCAA
Found at i:55034 original size:22 final size:22
Alignment explanation
Indices: 54955--55385 Score: 184
Period size: 22 Copynumber: 19.9 Consensus size: 22
54945 AAGATCTCAC
*
54955 TATGAAATTTTGATAACTTCCCA
1 TATGAAATTTTGATAACCT-CCA
**
54978 -ATGAAATTTTGATAACCAACA
1 TATGAAATTTTGATAACCTCCA
* *
54999 CTATGAGATGTTGATAACCTCCA
1 -TATGAAATTTTGATAACCTCCA
* * * **
55022 TATGATATATTGATAACCACGT
1 TATGAAATTTTGATAACCTCCA
* * *
55044 TAT-AAAATTTAAAAACCTCCA
1 TATGAAATTTTGATAACCTCCA
55065 TATG-AATTGTTAGTAATAACACT-C-
1 TATGAAATT-TT-G--ATAAC-CTCCA
55089 --TGAAATTTTGATAA--TCACA
1 TATGAAATTTTGATAACCTC-CA
* **
55108 CTATGAAATTGTGATAACCTCGT
1 -TATGAAATTTTGATAACCTCCA
* *
55131 TATCAAAGTTTGATTAACCTTCC-
1 TATGAAATTTTGA-TAACC-TCCA
* *
55154 TATAAAATTTTGATAAACCTCCC
1 TATGAAATTTTGAT-AACCTCCA
* *
55177 TATAAAATTTTGATAACCTCCT
1 TATGAAATTTTGATAACCTCCA
* *
55199 TGTGAAATCTTGATAA----C-
1 TATGAAATTTTGATAACCTCCA
* *
55216 TA-CAAATTTTGATAACCTCCC
1 TATGAAATTTTGATAACCTCCA
* *
55237 TATGATTATTTT-ATAACCTCCC
1 TATGA-AATTTTGATAACCTCCA
* * *
55259 TATGAAATTTTGTTAATCTCCC
1 TATGAAATTTTGATAACCTCCA
* * * *
55281 TATGAAATTTTGTTCTACATAC-
1 TATGAAATTTTGAT-AACCTCCA
**
55303 TATGAAATTTTGATAACCTTAA
1 TATGAAATTTTGATAACCTCCA
* *
55325 TATGAAATTTTAATATCCTCC-
1 TATGAAATTTTGATAACCTCCA
* *
55346 -CTGAAATTTTGATTA-CTCCA
1 TATGAAATTTTGATAACCTCCA
* * *
55366 TAATAAAAGTTTAATAACCT
1 T-ATGAAATTTTGATAACCT
55386 TCCTAATTTG
Statistics
Matches: 307, Mismatches: 66, Indels: 70
0.69 0.15 0.16
Matches are distributed among these distances:
16 12 0.04
17 1 0.00
18 2 0.01
19 8 0.03
20 12 0.04
21 29 0.09
22 167 0.54
23 65 0.21
24 4 0.01
25 5 0.02
26 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTCCA
Found at i:55194 original size:45 final size:45
Alignment explanation
Indices: 55091--55195 Score: 106
Period size: 45 Copynumber: 2.3 Consensus size: 45
55081 TAACACTCTG
* * ** *
55091 AAATTTTGATAATC-ACACTATGAAATTGTGATAACCTCGTTATC
1 AAATTTTGATAACCTACACTATAAAATTGTGATAACCTCCCTATA
* * *
55135 AAAGTTTGATTAACCTTC-CTATAAAATTTTGATAAACCTCCCTATA
1 AAATTTTGA-TAACCTACACTATAAAATTGTGAT-AACCTCCCTATA
55181 AAATTTTGATAACCT
1 AAATTTTGATAACCT
55196 CCTTGTGAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
44 8 0.16
45 23 0.47
46 18 0.37
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (45 bp):
AAATTTTGATAACCTACACTATAAAATTGTGATAACCTCCCTATA
Found at i:55514 original size:22 final size:22
Alignment explanation
Indices: 55466--55608 Score: 87
Period size: 22 Copynumber: 6.6 Consensus size: 22
55456 TCACATTTTG
*
55466 AAAA-TTTGATAACCTCTTTAT
1 AAAATTTTGATAACCTCTCTAT
** *
55487 GGAATTTTAATAACCTCTCTAT
1 AAAATTTTGATAACCTCTCTAT
* * *
55509 AAAATTTTGTTGACCCCTCTAT
1 AAAATTTTGATAACCTCTCTAT
* * *
55531 GAAATTTTGATAATCACAT-TAT
1 AAAATTTTGATAACCTC-TCTAT
** * *
55553 GTAATTTTGATAACCTCGCTTT
1 AAAATTTTGATAACCTCTCTAT
** *
55575 GGAATTTTGATAATCT-TCCTAT
1 AAAATTTTGATAACCTCT-CTAT
55597 -AAATTTTGATAA
1 AAAATTTTGATAA
55609 ATCGATCGCT
Statistics
Matches: 93, Mismatches: 25, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
21 13 0.14
22 79 0.85
23 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (22 bp):
AAAATTTTGATAACCTCTCTAT
Found at i:55559 original size:44 final size:44
Alignment explanation
Indices: 55439--55857 Score: 155
Period size: 44 Copynumber: 9.4 Consensus size: 44
55429 AGAAATACCA
* * *
55439 CTATGAAATTTTGGTAATCACATTTTGAAAATTTGATAACCTCT
1 CTATGAAATTTTGATAATCACATTATGAAATTTTGATAACCTCT
* * * * * * * * *
55483 TTATGGAATTTTAATAACCTC-TCTATAAAATTTTGTTGACCCCT
1 CTATGAAATTTTGATAATCACAT-TATGAAATTTTGATAACCTCT
* *
55527 CTATGAAATTTTGATAATCACATTATGTAATTTTGATAACCTCG
1 CTATGAAATTTTGATAATCACATTATGAAATTTTGATAACCTCT
* * * * * *
55571 CTTTGGAATTTTGATAATCTTC-CTAT-AAATTTTGATAAATCGATCG
1 CTATGAAATTTTGATAATC-ACATTATGAAATTTTGAT-AA-C-CTCT
** *
55617 CTATGAAATTCCGAT-ATCAC-TCTATGAGA-TTTGATAACCT-T
1 CTATGAAATTTTGATAATCACAT-TATGAAATTTTGATAACCTCT
* * * * * *
55658 TTATCAAATTTTGGTACT-TC-TTATGAAATTGAGACTTTTATAACCT-T
1 CTATGAAATTTTGATAATCACATTATGAAA-T-----TTTGATAACCTCT
* * * ** * * *
55705 CATATGAAATTTTGATAACCGCACTAAAAAAATTTGATAACCACA
1 C-TATGAAATTTTGATAATCACATTATGAAATTTTGATAACCTCT
*** *
55750 CTATGAAATTTTGATAACCTC-CCCCATGAAATATT-AGTAACCTC-
1 CTATGAAATTTTGATAA--TCACATTATGAAATTTTGA-TAACCTCT
* * * * *
55794 CTTATGAAATTTTGTTAACCACACTATGAAATTCTT-ATAATCTCG
1 C-TATGAAATTTTGATAATCACATTATGAAATT-TTGATAACCTCT
*
55839 CTATGACATTTTGATAATC
1 CTATGAAATTTTGATAATC
55858 TCTTTGATAA
Statistics
Matches: 271, Mismatches: 77, Indels: 54
0.67 0.19 0.13
Matches are distributed among these distances:
40 6 0.02
41 12 0.04
42 2 0.01
43 12 0.04
44 143 0.53
45 49 0.18
46 17 0.06
47 11 0.04
48 13 0.05
49 1 0.00
50 5 0.02
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.39
Consensus pattern (44 bp):
CTATGAAATTTTGATAATCACATTATGAAATTTTGATAACCTCT
Found at i:55597 original size:88 final size:87
Alignment explanation
Indices: 55439--55604 Score: 228
Period size: 88 Copynumber: 1.9 Consensus size: 87
55429 AGAAATACCA
* * *
55439 CTATGAAATTTTGGTAATCACATTTTGAAAATTTGATAACCTCTTTATGGAATTTTAATAACCTC
1 CTATGAAATTTTGATAATCACATTATGAAAATTTGATAACCTCCTTATGGAATTTTAATAACCTC
55504 TCTATAAAATTTTGTTGACCCCT
66 TCTAT-AAATTTTGTTGACCCCT
* * * *
55527 CTATGAAATTTTGATAATCACATTATGTAATTTTGATAACCTCGCTT-TGGAATTTTGATAATCT
1 CTATGAAATTTTGATAATCACATTATGAAAATTTGATAACCTC-CTTATGGAATTTTAATAACCT
55591 -TCCTATAAATTTTG
65 CT-CTATAAATTTTG
55605 ATAAATCGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
87 9 0.13
88 58 0.84
89 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (87 bp):
CTATGAAATTTTGATAATCACATTATGAAAATTTGATAACCTCCTTATGGAATTTTAATAACCTC
TCTATAAATTTTGTTGACCCCT
Found at i:55722 original size:22 final size:22
Alignment explanation
Indices: 55707--55855 Score: 115
Period size: 22 Copynumber: 6.7 Consensus size: 22
55697 ATAACCTTCA
*
55707 TATGAAATTTTGATAACCGCAC
1 TATGAAATTTTGATAACCACAC
** *
55729 TAAAAAAATTTGATAACCACAC
1 TATGAAATTTTGATAACCACAC
* *
55751 TATGAAATTTTGATAACCTCCCC
1 TATGAAATTTTGATAACC-ACAC
* * *
55774 CATGAAATATT-AGTAACCTC-C
1 TATGAAATTTTGA-TAACCACAC
*
55795 TTATGAAATTTTGTTAACCACAC
1 -TATGAAATTTTGATAACCACAC
* * *
55818 TATGAAATTCTT-ATAATCTCGC
1 TATGAAATT-TTGATAACCACAC
*
55840 TATGACATTTTGATAA
1 TATGAAATTTTGATAA
55856 TCTCTTTGAT
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
21 3 0.03
22 77 0.78
23 19 0.19
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (22 bp):
TATGAAATTTTGATAACCACAC
Found at i:56025 original size:22 final size:22
Alignment explanation
Indices: 56000--56061 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
55990 AAACCACACT
56000 ATGGAATTTTGATAACC-TCCTC
1 ATGGAATTTTGATAACCAT-CTC
*** *
56022 ATGGAATTACAATAACCATCTT
1 ATGGAATTTTGATAACCATCTC
*
56044 ATGAAATTTTGATAACCA
1 ATGGAATTTTGATAACCA
56062 CACAGAGACA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
22 30 0.97
23 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (22 bp):
ATGGAATTTTGATAACCATCTC
Found at i:56267 original size:20 final size:20
Alignment explanation
Indices: 56229--56267 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
56219 TATTAACATT
56229 TAAAAAATTGAAATTAAAAG
1 TAAAAAATTGAAATTAAAAG
*
56249 TAAAATATT-AAATTCAAAA
1 TAAAAAATTGAAATT-AAAA
56268 AAATAATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (20 bp):
TAAAAAATTGAAATTAAAAG
Found at i:57341 original size:25 final size:25
Alignment explanation
Indices: 57313--57360 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
57303 ATATATATAT
*
57313 ATATATATT-ATTAAATAAATAATAA
1 ATATATATTAAAT-AATAAATAATAA
*
57338 ATATATTTTAAATAATAAATAAT
1 ATATATATTAAATAATAAATAAT
57361 GAGTTCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
ATATATATTAAATAATAAATAATAA
Found at i:57929 original size:35 final size:35
Alignment explanation
Indices: 57883--57952 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
57873 AATGATTATT
57883 CCTTCCAATTATTCCTTAATTAATTTGATGTTGAG
1 CCTTCCAATTATTCCTTAATTAATTTGATGTTGAG
57918 CCTTCCAATTATTCCTTAATTAATTTGATGTTGAG
1 CCTTCCAATTATTCCTTAATTAATTTGATGTTGAG
57953 AAGCATTACG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.17, G:0.11, T:0.46
Consensus pattern (35 bp):
CCTTCCAATTATTCCTTAATTAATTTGATGTTGAG
Found at i:61191 original size:45 final size:48
Alignment explanation
Indices: 61099--61192 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 48
61089 TCAATCTTAA
*
61099 ATAAAATTACCCATTAGAGGATAAATATATATAAGTATTTAAATTTTAT
1 ATAAAACTACCCATTAGAGGAT-AATATATATAAGTATTTAAATTTTAT
* *
61148 ATAAAACTACCCATTAGATGAT-A-A-ATATAAGTGTTTAAATTTTAT
1 ATAAAACTACCCATTAGAGGATAATATATATAAGTATTTAAATTTTAT
61193 TTATATCATT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
45 20 0.48
46 1 0.02
47 1 0.02
49 20 0.48
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.38
Consensus pattern (48 bp):
ATAAAACTACCCATTAGAGGATAATATATATAAGTATTTAAATTTTAT
Done.