Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013346.1 Corchorus olitorius cultivar O-4 contig13379, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65454

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1976--2074
51
1.9
52
95
2
182
32
7
6
54
1.52
2458--2488
16
1.9
16
93
0
53
35
22
6
35
1.80
7634--7744
55
2.0
55
92
0
186
36
21
18
23
1.95
8003--8044
22
1.9
22
85
0
57
21
0
26
52
1.47
8460--8543
42
2.0
42
95
2
150
22
13
7
57
1.60
10294--10318
2
12.5
2
100
0
50
52
0
48
0
1.00
12220--12259
21
2.0
21
85
5
55
35
10
20
35
1.86
12641--12673
15
2.2
15
89
10
50
15
0
0
84
0.61
22946--23003
16
3.7
16
82
11
75
55
31
12
1
1.47
22947--23029
32
2.6
31
84
5
103
50
31
10
7
1.64
23242--23333
32
2.9
32
88
3
132
40
33
7
18
1.79
23264--23314
16
3.2
16
67
10
50
39
37
7
15
1.77
24713--24772
6
9.8
6
82
13
61
76
16
6
0
0.99
24716--24769
11
4.3
13
84
15
62
77
14
7
0
0.97
24840--24873
11
3.1
11
100
0
68
35
0
47
17
1.48
26362--26409
21
2.1
25
85
14
68
20
14
20
43
1.87
27568--27703
31
4.4
29
80
10
94
25
29
13
31
1.94
27593--27703
32
3.6
30
84
6
134
25
29
14
30
1.95
30988--31025
20
1.9
20
100
0
76
36
34
13
15
1.87
38571--38640
36
2.0
35
85
2
95
45
11
28
14
1.79
50042--50070
15
1.9
15
100
0
58
31
6
0
62
1.22
53604--54285
351
1.9
351
92
2
1147
33
20
21
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54192--54227
18
1.9
19
88
5
56
30
36
22
11
1.89
55064--55141
35
2.2
35
95
2
138
25
5
23
46
1.73
56490--56575
32
2.7
32
73
7
84
24
26
19
29
1.99
61508--61630
54
2.3
54
91
0
201
36
8
21
33
1.83

Tables:   1

The End!