genome.fa.s13350.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013350.1 Corchorus olitorius cultivar O-4 contig13383, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29101

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--317	40	7.7	41	77	11	258	15	27	20	37	1.92
1--272	81	3.3	80	81	8	282	15	28	19	36	1.93
155--250	48	2.0	49	89	2	149	15	29	16	38	1.90
279--767	48	10.2	46	82	8	582	13	22	20	42	1.87
277--770	96	5.1	96	89	2	751	13	22	20	43	1.87
277--978	144	4.7	142	77	9	706	13	21	20	43	1.86
700--833	67	2.0	68	95	1	243	13	21	17	47	1.81
604--933	163	2.0	164	88	1	493	13	21	20	45	1.84
656--885	115	2.0	116	89	2	356	13	21	18	46	1.83
560--1030	211	2.2	211	89	2	719	13	21	19	44	1.86
772--979	48	4.3	49	89	1	300	13	20	20	46	1.84
1739--1842	30	3.5	30	98	0	199	26	6	26	39	1.81
3983--4053	21	3.4	21	94	3	117	26	26	18	28	1.98
9035--9081	26	1.9	24	87	12	69	40	4	27	27	1.75
9928--10020	42	2.2	42	86	3	134	26	24	18	30	1.98
9929--10008	21	3.8	21	91	0	133	27	26	18	27	1.98
13850--13959	33	3.5	32	72	18	104	20	21	3	53	1.61
13906--13974	32	2.1	33	84	7	88	15	23	5	55	1.62
13997--14059	26	2.4	27	84	10	85	17	22	1	58	1.47
14014--14067	26	2.1	26	83	10	67	22	18	1	57	1.50
14070--14183	21	5.8	21	66	21	66	26	24	3	45	1.69
14131--14205	14	5.4	14	71	16	50	21	22	2	53	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14168--14253	41	2.1	41	91	0	136	20	20	4	53	1.63
14289--14540	37	6.9	36	81	11	275	39	16	16	27	1.90
14333--14540	72	2.9	72	90	4	305	39	16	15	28	1.89
16268--16302	17	2.0	18	94	5	63	0	8	5	85	0.73
20866--21198	31	10.4	33	77	8	228	40	13	23	22	1.90
20805--21149	65	5.4	65	79	6	223	38	15	23	22	1.92
20873--21176	98	3.2	96	81	5	341	38	14	24	23	1.91
21194--21556	39	9.3	39	91	1	550	32	18	17	31	1.94
21562--21594	16	2.1	16	94	0	57	45	3	27	24	1.68
21618--21904	22	13.2	22	74	16	103	43	4	19	32	1.72
21628--21985	14	24.6	14	69	21	135	44	4	19	31	1.71
21653--21985	36	9.2	36	72	17	205	44	4	19	31	1.72
21839--21983	22	6.6	22	90	3	220	44	4	19	31	1.71
21628--21982	8	48.9	7	64	22	89	44	4	19	31	1.71
21953--22368	56	7.6	56	85	5	546	41	9	21	26	1.84
22236--22328	46	2.0	46	87	0	132	39	10	21	27	1.87
22353--22463	22	5.0	22	82	2	132	43	1	23	31	1.64
22361--22463	44	2.3	44	93	1	170	41	1	24	32	1.66
22361--22463	14	6.9	15	74	14	90	41	1	24	32	1.66

Tables:   1

The End!