Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013356.1 Corchorus olitorius cultivar O-4 contig13389, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5270
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:2968 original size:26 final size:26

Alignment explanation


    Indices: 2935--2989  Score: 101
    Period size: 26  Copynumber: 2.1  Consensus size: 26

       2925 CATGAAAAAC

                     *                
       2935 TTACATGAATGTAGTGGATTAGCACT
          1 TTACATGAACGTAGTGGATTAGCACT

                                      
       2961 TTACATGAACGTAGTGGATTAGCACT
          1 TTACATGAACGTAGTGGATTAGCACT

               
       2987 TTA
          1 TTA

       2990 TATTAGGACC


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   28  1.00

ACGTcount: A:0.31, C:0.13, G:0.22, T:0.35


Consensus pattern (26 bp):   
TTACATGAACGTAGTGGATTAGCACT
Done.