Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013358.1 Corchorus olitorius cultivar O-4 contig13391, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23016

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4123--4169
22
2.1
22
88
7
69
63
2
10
23
1.37
4137--4169
8
4.4
8
85
14
52
63
0
12
24
1.28
4123--4169
14
3.2
14
80
16
51
63
2
10
23
1.37
3758--4615
425
2.0
428
95
0
1560
48
5
9
36
1.58
4548--4594
22
2.1
22
88
7
69
63
2
10
23
1.37
4471--4655
93
2.0
93
91
0
298
53
2
11
31
1.51
4562--4594
8
4.4
8
85
14
52
63
0
12
24
1.28
4548--4594
14
3.2
14
80
16
51
63
2
10
23
1.37
4691--4752
31
2.0
31
96
0
115
43
3
20
32
1.68
6176--6222
2
24.0
2
89
4
69
48
4
0
46
1.21
8140--8185
3
15.3
3
100
0
92
67
0
0
32
0.91
8514--8652
31
4.5
31
87
3
172
30
23
27
18
1.98
8512--8652
62
2.3
62
85
2
194
30
24
26
18
1.98
12435--12533
48
2.1
48
88
3
146
15
13
44
27
1.83
17088--17116
13
2.2
13
100
0
58
65
0
6
27
1.18
17671--17766
44
2.2
44
84
1
120
42
15
9
32
1.79
18461--18533
3
24.3
3
100
0
146
67
0
0
32
0.91
22326--22354
14
2.1
14
100
0
58
27
0
44
27
1.54
22410--22441
15
2.1
15
94
0
55
37
15
0
46
1.46
22454--22520
31
2.2
31
86
0
89
31
16
5
46
1.71
22556--22701
77
1.9
77
95
0
265
34
12
1
52
1.48

Tables:   1

The End!