Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013364.1 Corchorus olitorius cultivar O-4 contig13397, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26955

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5067--5091
12
2.1
12
100
0
50
16
44
0
40
1.47
6262--6289
2
14.0
2
100
0
56
0
0
50
50
1.00
12234--12268
18
1.9
18
100
0
70
14
0
5
80
0.89
12237--12279
18
2.4
18
88
7
61
16
0
9
74
1.06
12646--12689
22
2.0
21
87
12
63
11
13
0
75
1.06
12649--12690
15
2.8
15
79
10
50
11
16
0
71
1.14
13620--13659
21
1.9
21
89
0
62
25
35
22
17
1.95
13612--13798
71
2.6
70
90
3
286
33
27
21
18
1.96
13692--13733
21
2.0
21
100
0
84
23
38
19
19
1.93
13763--13805
22
2.0
22
85
0
59
23
32
20
23
1.98
16007--16036
15
2.1
14
93
6
51
76
20
3
0
0.92
20252--20353
28
3.7
27
84
3
132
40
24
14
20
1.90
21541--21573
16
2.1
15
94
5
57
66
12
6
15
1.42
24823--24887
21
3.0
21
79
2
76
13
21
47
16
1.82

Tables:   1

The End!