Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013366.1 Corchorus olitorius cultivar O-4 contig13399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15386

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
219--261
20
2.2
20
86
0
59
13
23
18
44
1.86
2687--2741
26
2.0
27
86
10
76
49
27
10
12
1.74
9720--9964
114
2.2
112
93
1
409
23
20
23
32
1.98
9763--9993
114
2.0
112
86
6
315
28
20
21
29
1.98
10151--10471
159
2.0
159
99
0
633
26
18
17
37
1.93
10565--10641
39
2.0
39
92
0
127
24
18
28
28
1.98
10615--10658
14
3.1
14
90
0
61
22
15
27
34
1.95
11051--11200
43
3.7
42
77
17
174
26
21
20
32
1.98
11051--11194
77
1.9
77
92
2
245
25
20
20
33
1.97
11187--11247
30
2.0
30
87
6
88
22
29
19
27
1.98
11253--11373
51
2.4
51
91
0
188
28
17
14
39
1.89
11253--11401
51
2.9
51
87
0
172
27
20
14
37
1.91
11410--11497
31
2.8
32
87
1
124
26
23
17
32
1.96
11650--11888
36
6.6
36
85
0
316
23
25
23
28
2.00
11650--11877
72
3.2
72
97
0
420
24
25
23
27
2.00
12051--12187
46
3.0
46
85
0
193
29
21
16
31
1.96
12672--12773
45
2.3
45
84
3
125
39
20
18
21
1.93
13889--13952
27
2.4
27
89
5
94
32
14
23
29
1.94

Tables:   1

The End!