Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013369.1 Corchorus olitorius cultivar O-4 contig13402, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3026
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28


Found at i:607 original size:23 final size:23

Alignment explanation


    Indices: 564--607  Score: 54
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        554 AAGTTTTTTT

                            *      
        564 AATAAAATTAGTAAAATGATAAA
          1 AATAAAATTAGTAAAAGGATAAA

                          *       
        587 AATAAAA-TAGGTATAAGGATA
          1 AATAAAATTA-GTAAAAGGATA

        608 TTAGATTTAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  22    2  0.11
  23   16  0.89

ACGTcount: A:0.61, C:0.00, G:0.14, T:0.25


Consensus pattern (23 bp):   
AATAAAATTAGTAAAAGGATAAA
Done.