Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013370.1 Corchorus olitorius cultivar O-4 contig13403, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36266

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
227--302
38
2.0
38
84
5
100
51
25
9
14
1.71
5374--5406
3
11.0
3
93
0
57
63
0
33
3
1.10
6248--7764
766
2.0
764
95
1
2752
36
16
17
30
1.91
8810--8928
44
2.8
43
83
3
132
26
21
10
42
1.85
8810--8928
42
2.8
43
84
3
134
26
21
10
42
1.85
10072--10107
15
2.5
15
90
4
56
38
8
13
38
1.75
10469--10522
23
2.4
22
82
11
65
44
14
25
14
1.84
10551--10597
24
2.0
24
83
8
60
61
10
12
14
1.56
10783--10812
9
3.4
9
95
4
53
83
0
10
6
0.81
13185--13691
64
7.9
64
81
5
533
32
17
22
27
1.96
13187--13691
128
3.9
129
83
6
605
32
17
22
27
1.97
14308--14359
26
2.0
25
85
10
70
21
19
19
40
1.92
16738--16836
3
33.0
3
95
0
180
65
1
32
1
1.06
17650--17700
20
2.4
21
83
9
68
76
5
7
9
1.15
23000--23114
47
2.4
47
97
0
212
23
19
14
42
1.88
24168--24203
19
1.9
18
88
5
54
33
22
2
41
1.68
25830--25867
15
2.5
15
86
4
58
76
0
21
2
0.91
29906--29953
11
4.7
11
80
12
50
39
10
20
29
1.86
31311--31352
15
2.7
15
96
3
75
11
7
14
66
1.43
31685--31742
31
2.0
28
86
10
80
34
6
17
41
1.76
31770--31838
30
2.3
30
85
9
95
52
4
10
33
1.55
31770--31851
32
2.8
29
81
13
96
45
7
10
36
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31795--31859
29
2.2
29
75
0
67
53
7
7
30
1.57
34336--34378
21
2.0
21
86
4
59
16
48
18
16
1.81

Tables:   1

The End!