Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013372.1 Corchorus olitorius cultivar O-4 contig13405, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1693
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24


Found at i:742 original size:21 final size:21

Alignment explanation


    Indices: 703--748  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        693 GCATATTTAA

                        ***      
        703 TTTTAATTTTTATTTTAATAT
          1 TTTTAATTTTTACACTAATAT

                               * 
        724 TTTTAATTTTTACACTAATTT
          1 TTTTAATTTTTACACTAATAT

                
        745 TTTT
          1 TTTT

        749 TTCTTTGAGT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70


Consensus pattern (21 bp):   
TTTTAATTTTTACACTAATAT
Done.