Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013379.1 Corchorus olitorius cultivar O-4 contig13412, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34346

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95--148
19
2.6
21
77
19
60
38
3
18
38
1.69
2674--2708
18
1.9
18
94
0
61
20
11
22
45
1.82
2678--2728
25
2.1
24
92
3
84
17
11
17
52
1.73
5482--5699
22
9.8
22
74
11
142
34
10
17
37
1.84
5481--6044
44
13.0
44
68
17
227
37
9
16
35
1.82
5477--5699
66
3.3
66
83
7
272
33
10
18
37
1.85
5722--5855
22
6.2
21
69
13
69
38
6
20
35
1.79
5861--6045
22
8.5
22
73
15
120
42
10
11
35
1.76
6502--6544
18
2.4
18
76
7
52
51
0
2
46
1.13
6715--6792
22
3.5
22
82
5
86
44
10
10
34
1.72
6899--7345
44
10.2
44
73
10
301
36
9
17
36
1.82
6874--7345
22
21.6
22
72
14
257
37
9
16
36
1.81
8650--8734
30
2.8
31
83
5
120
11
40
11
36
1.79
16530--16583
22
2.5
21
79
8
54
42
11
9
37
1.73
16551--16600
22
2.2
22
86
10
66
48
10
14
28
1.75
32464--32505
15
2.7
15
96
3
75
66
14
7
11
1.43

Tables:   1

The End!