Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001338.1 Corchorus olitorius cultivar O-4 contig01338, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26


Found at i:57 original size:12 final size:13

Alignment explanation


    Indices: 35--64  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

         25 ACTAGCAATT

                         
         35 AAAATCAATCAAG
          1 AAAATCAATCAAG

                         
         48 AAAA-CAATCAAG
          1 AAAATCAATCAAG

                 
         60 AAAAT
          1 AAAAT

         65 TAAAGAAAAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13


Consensus pattern (13 bp):   
AAAATCAATCAAG
Done.