Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013383.1 Corchorus olitorius cultivar O-4 contig13416, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2997
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--34  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

                                                              
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

         35 CACGGGGTTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:218 original size:32 final size:32

Alignment explanation


    Indices: 171--231  Score: 95
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        161 TGTAAAACTT

                     **      *              
        171 TTGAATCGATTATTATATCCTTATTTTTCTAA
          1 TTGAATCGACCATTATACCCTTATTTTTCTAA

                                         
        203 TTGAATCGACCATTATACCCTTATTTTTC
          1 TTGAATCGACCATTATACCCTTATTTTTC

        232 AAACATATTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  32   26  1.00

ACGTcount: A:0.26, C:0.18, G:0.07, T:0.49


Consensus pattern (32 bp):   
TTGAATCGACCATTATACCCTTATTTTTCTAA
Done.