Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013387.1 Corchorus olitorius cultivar O-4 contig13420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43473

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1405--1464
24
2.5
24
86
0
93
21
21
33
23
1.97
5000--5038
3
13.3
3
84
15
55
35
0
0
64
0.94
5000--5038
18
2.2
17
95
4
69
35
0
0
64
0.94
8665--8689
13
1.9
13
100
0
50
4
8
0
88
0.64
9166--10098
436
2.1
436
82
5
1053
30
14
12
41
1.84
19072--19114
22
2.0
22
90
0
68
0
11
23
65
1.25
21285--21335
19
2.7
19
74
14
61
49
0
1
49
1.12
21688--21713
13
2.0
13
100
0
52
53
30
0
15
1.42
28573--28722
73
2.1
73
94
0
264
33
22
16
28
1.95
31006--31183
26
6.4
27
72
18
152
20
12
19
47
1.81
31030--31183
54
2.8
53
84
8
195
20
12
18
48
1.81
31198--31226
13
2.2
13
100
0
58
20
24
17
37
1.93
40202--40252
19
2.7
19
71
14
52
49
1
1
47
1.24
42912--42943
16
1.9
17
93
6
57
9
9
0
81
0.88

Tables:   1

The End!