Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01001339.1 Corchorus olitorius cultivar O-4 contig01339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1571

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
826--952
32
3.9
32
73
6
121
35
13
14
36
1.86
830--982
65
2.4
62
91
3
234
33
14
16
35
1.89
797--1012
30
6.7
33
75
6
135
33
14
17
34
1.90
895--1089
60
3.2
60
85
1
246
32
18
16
31
1.94
895--1553
90
7.2
91
78
12
393
29
20
18
31
1.97
895--1091
30
6.5
30
83
1
223
32
18
16
31
1.94
1078--1104
13
2.1
13
100
0
54
29
29
7
33
1.85
1048--1134
43
2.0
43
88
0
129
28
25
14
31
1.95
1091--1557
30
15.7
30
88
6
630
28
21
19
30
1.98
1031--1303
73
3.7
73
76
11
288
28
23
17
30
1.97
1151--1280
43
3.0
43
90
0
206
27
25
16
30
1.97

Tables:   1

The End!