Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013393.1 Corchorus olitorius cultivar O-4 contig13426, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61212

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3696--3906
110
1.9
110
94
1
370
21
14
15
48
1.80
11878--11909
15
2.1
15
100
0
64
40
0
37
21
1.54
11885--12243
182
2.0
181
96
0
664
21
13
20
45
1.85
12321--12383
21
3.0
21
95
0
108
50
15
28
4
1.64
12531--12578
20
2.4
20
92
0
78
16
16
41
25
1.89
12706--12982
93
3.0
90
86
6
369
24
15
14
45
1.83
13786--13875
41
2.3
38
82
14
121
36
15
13
34
1.87
13532--13978
228
2.0
227
95
0
813
36
16
11
34
1.85
14005--14029
13
1.9
13
100
0
50
48
0
0
52
1.00
15220--15271
18
2.9
18
100
0
104
46
5
11
36
1.64
17822--17855
15
2.3
15
89
0
50
61
0
38
0
0.96
17821--17861
19
2.1
19
90
4
64
60
0
39
0
0.96
18923--18964
21
2.0
22
90
4
68
21
23
33
21
1.97
22501--22534
15
2.3
15
89
0
50
61
0
38
0
0.96
22499--22541
19
2.2
19
91
4
68
62
0
37
0
0.95
22955--22986
2
16.5
2
93
6
57
50
0
0
50
1.00
23903--23999
48
2.0
47
84
5
124
43
19
7
29
1.78
34612--34641
15
1.9
16
93
6
53
26
13
20
40
1.89
36653--36744
47
2.0
47
91
0
148
40
11
18
29
1.86
46578--46611
2
17.0
2
93
0
59
47
0
2
50
1.16
46766--47041
143
1.9
143
91
2
455
39
13
18
29
1.88
47517--47552
15
2.4
15
85
0
54
0
41
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47511--47551
20
2.1
19
90
4
64
0
39
0
60
0.96
51091--51132
21
2.0
22
90
4
68
21
33
26
19
1.97
51801--51851
22
2.3
22
100
0
102
23
37
25
13
1.92
52851--52884
18
1.9
18
94
5
61
47
0
44
8
1.34
57086--57128
22
1.9
23
95
4
79
37
13
23
25
1.92

Tables:   1

The End!