Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013396.1 Corchorus olitorius cultivar O-4 contig13429, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2382
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29


Found at i:1879 original size:33 final size:33

Alignment explanation


    Indices: 1819--1940  Score: 163
    Period size: 33  Copynumber: 3.6  Consensus size: 33

       1809 AGCCTTACCA

                                *             
       1819 AGGCGCTGGGCCAGCTGGCCTGTGCGCCTGGCCT
          1 AGGCGCTGGGCCA-CTGGCCCGTGCGCCTGGCCT

                *        *       *           
       1853 AGGCACTGGGCCATTGGCCCGCGCGCCTGGCCT
          1 AGGCGCTGGGCCACTGGCCCGTGCGCCTGGCCT

                   *                      *  
       1886 AGGCGCTAGGCCACTGGCCCGTGCGCCTGGTCT
          1 AGGCGCTGGGCCACTGGCCCGTGCGCCTGGCCT

                                  
       1919 AGGGGCGCTGGGCCACTGGCCC
          1 A--GGCGCTGGGCCACTGGCCC

       1941 AACAGCCTTT


Statistics
Matches: 76,  Mismatches: 10, Indels: 3
        0.85            0.11        0.03

Matches are distributed among these distances:
  33   46  0.61
  34   12  0.16
  35   18  0.24

ACGTcount: A:0.08, C:0.37, G:0.39, T:0.16


Consensus pattern (33 bp):   
AGGCGCTGGGCCACTGGCCCGTGCGCCTGGCCT
Done.