Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013398.1 Corchorus olitorius cultivar O-4 contig13431, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9366
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:5606 original size:21 final size:21

Alignment explanation


    Indices: 5582--5652  Score: 133
    Period size: 21  Copynumber: 3.4  Consensus size: 21

       5572 TGCTAGGAGT

                                 
       5582 TCATTGGAGAAGGTTCCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                                 
       5603 TCATTGGAGAAGGTTCCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                                *
       5624 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                    
       5645 TCATTGGA
          1 TCATTGGA

       5653 ATTGCCTAAG


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  21   49  1.00

ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Found at i:7250 original size:23 final size:24

Alignment explanation


    Indices: 7201--7249  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       7191 GTTTCTCCTG

                                    
       7201 TTCTTTTTCCCTATTCTGGAATTT
          1 TTCTTTTTCCCTATTCTGGAATTT

                                    
       7225 TTCTTTTTCCCTATTCTGGAATTT
          1 TTCTTTTTCCCTATTCTGGAATTT

             
       7249 T
          1 T

       7250 CAAACTTTCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.12, C:0.20, G:0.08, T:0.59


Consensus pattern (24 bp):   
TTCTTTTTCCCTATTCTGGAATTT
Done.