Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013400.1 Corchorus olitorius cultivar O-4 contig13433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3044
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37


Found at i:1259 original size:24 final size:26

Alignment explanation


    Indices: 1212--1261  Score: 70
    Period size: 24  Copynumber: 2.0  Consensus size: 26

       1202 CCAAGGCCTT

                                      
       1212 ATCATGGACATGAGATGACAATGGAG
          1 ATCATGGACATGAGATGACAATGGAG

                                       
       1238 ATCATGGA-ATG-GATGAGC-ATGGAG
          1 ATCATGGACATGAGATGA-CAATGGAG

       1262 TGCAAGGAAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  24   11  0.48
  25    4  0.17
  26    8  0.35

ACGTcount: A:0.36, C:0.10, G:0.34, T:0.20


Consensus pattern (26 bp):   
ATCATGGACATGAGATGACAATGGAG

Found at i:2917 original size:2 final size:2

Alignment explanation


    Indices: 2910--2951  Score: 84
    Period size: 2  Copynumber: 21.0  Consensus size: 2

       2900 GTTATACTAC

                                                                          
       2910 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       2952 AATCATCAAT


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   40  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.