Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013403.1 Corchorus olitorius cultivar O-4 contig13436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33055

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3515--3549
18
1.9
18
88
0
52
20
14
22
42
1.88
4350--4497
76
1.9
76
89
5
228
35
17
14
32
1.91
4359--4584
37
5.9
37
79
9
231
33
16
15
35
1.90
15241--15335
32
3.0
33
80
11
117
27
17
20
34
1.95
16547--16577
2
15.5
2
100
0
62
48
0
0
51
1.00
18966--19026
32
1.9
32
89
0
95
27
22
26
22
1.99
19065--19110
23
2.0
23
91
0
74
23
23
23
28
2.00
21378--21406
2
14.5
2
100
0
58
48
0
0
51
1.00
27543--27915
41
8.8
42
75
15
342
23
10
24
40
1.86
27587--27915
43
7.8
44
81
10
398
23
10
25
40
1.87
27543--27915
84
4.4
84
94
2
601
23
10
24
40
1.86
28257--28303
18
2.6
18
86
6
60
21
19
8
51
1.73
28358--28404
24
2.0
23
95
4
85
31
12
12
42
1.81
28634--28672
20
2.0
20
84
0
51
56
23
10
10
1.63
29269--29317
21
2.3
21
85
0
62
34
20
10
34
1.86

Tables:   1

The End!