Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013404.1 Corchorus olitorius cultivar O-4 contig13437, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55615

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
265--572
91
3.4
91
95
0
553
31
16
15
36
1.91
471--743
122
2.2
123
92
0
458
30
17
20
31
1.96
3100--4001
373
2.4
373
94
1
1574
36
16
16
29
1.92
8617--8648
9
3.6
9
95
0
55
34
21
25
18
1.96
10848--10880
15
2.3
15
89
5
50
9
9
0
81
0.87
11909--11948
18
2.2
18
86
4
53
45
5
20
30
1.72
17212--17248
18
2.1
18
89
0
56
37
10
5
45
1.62
24682--24722
21
2.0
21
85
0
55
7
26
46
19
1.76
28847--28883
18
2.0
19
89
5
58
59
8
18
13
1.58
38103--38140
16
2.4
16
90
0
58
42
34
10
13
1.78
38382--38433
21
2.5
20
78
9
59
21
42
21
15
1.89
38483--38519
11
3.5
11
79
20
51
24
51
24
0
1.49
38473--38528
21
2.7
21
100
0
112
23
53
23
0
1.46
38767--38800
15
2.3
15
90
10
52
8
11
0
79
0.94
39734--39793
31
1.9
31
86
0
84
56
11
15
16
1.67
47818--47901
28
3.1
28
68
22
88
35
15
7
41
1.75
53311--53369
31
1.9
31
89
0
91
32
15
18
33
1.92

Tables:   1

The End!