Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013405.1 Corchorus olitorius cultivar O-4 contig13438, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133168

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--54
2
24.5
2
95
4
91
2
50
0
48
1.12
164--207
12
3.5
12
76
11
52
43
6
2
47
1.42
164--220
26
2.2
26
87
6
80
42
10
1
45
1.49
11937--12122
91
2.0
91
98
0
363
34
24
12
27
1.92
13445--13490
18
2.8
17
83
12
60
34
0
36
28
1.58
15528--15558
2
15.5
2
100
0
62
48
0
0
51
1.00
18024--18061
3
12.7
3
100
0
76
0
31
68
0
0.90
18833--18867
3
11.7
3
100
0
70
68
0
0
31
0.90
24720--24750
2
15.5
2
100
0
62
51
0
0
48
1.00
25220--25263
21
2.1
21
83
8
54
6
36
11
45
1.67
26552--26579
2
14.0
2
100
0
56
50
0
0
50
1.00
39193--39284
27
3.4
28
83
3
107
35
27
19
17
1.94
53287--53344
29
2.0
29
100
0
116
17
17
17
48
1.82
55622--55716
41
2.3
41
81
0
118
26
16
13
43
1.86
56356--56396
18
2.3
18
82
0
55
68
2
17
12
1.31
58554--59252
349
2.0
349
97
0
1326
44
16
16
23
1.86
62121--62174
2
27.0
2
100
0
108
50
50
0
0
1.00
67587--67612
13
2.0
13
100
0
52
15
7
7
69
1.35
75861--76561
40
16.4
40
76
9
317
19
24
18
37
1.93
75861--76561
80
8.2
80
74
11
389
19
24
18
37
1.93
75961--76268
47
6.7
47
84
6
389
19
23
17
39
1.92
75921--76362
181
2.4
183
86
2
611
19
24
17
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76008--76268
134
1.9
134
85
1
362
19
23
16
39
1.92
84988--85012
13
1.9
13
100
0
50
40
4
8
48
1.51
85415--85447
16
2.1
16
94
0
57
57
15
6
21
1.59
87870--87902
10
3.2
10
95
4
57
87
0
0
12
0.53
95078--95124
23
2.0
23
100
0
94
8
17
21
53
1.70
102351--102476
27
4.5
28
83
5
130
36
26
19
17
1.94
102351--102476
56
2.2
55
81
6
137
36
26
19
17
1.94
102351--102477
29
4.5
30
82
7
108
36
26
18
18
1.94
105047--105106
23
2.6
22
79
10
66
15
16
13
55
1.70
105065--105110
23
2.0
24
86
4
67
15
15
10
58
1.63
105084--105131
19
2.4
20
89
6
71
12
18
8
60
1.57
120541--120943
39
10.5
38
80
11
330
27
19
15
38
1.91
120582--120943
78
4.7
76
79
13
370
26
18
15
39
1.90
120573--120877
111
2.7
111
80
10
325
26
18
15
39
1.90
121869--121934
24
2.8
24
79
11
73
16
18
12
53
1.73
121906--121945
19
2.1
19
90
0
62
15
17
10
57
1.64
121929--121956
13
2.2
13
100
0
56
17
21
14
46
1.84
124384--124429
23
2.0
23
83
8
58
21
23
13
41
1.88
126189--126252
34
2.0
31
88
11
94
35
14
18
31
1.91
127476--127507
16
2.0
16
93
0
55
59
18
3
18
1.51
132029--132099
26
2.7
27
80
2
72
21
16
19
42
1.89

Tables:   1

The End!