Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013407.1 Corchorus olitorius cultivar O-4 contig13440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10466
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Found at i:2245 original size:30 final size:30
Alignment explanation
Indices: 2211--2915 Score: 839
Period size: 30 Copynumber: 23.8 Consensus size: 30
2201 AGAGAGAGAG
* * *
2211 AACCAAGATTGAAATGAAGCAATGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
2241 AACCAGGATTAAAATAAAGCAATGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* * *
2271 AAACAGGATTGAAATGAAGCAATGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
2301 AACCAGGATTAAAATAAAGCAATGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* * *
2331 AAACAGGATTAAAATAGAGCGATGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* * *
2361 AAACAGGATTGAAATAAAACAATGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* *
2391 AACCAGGATAAAAATAAAGCAATGATCCTA
1 AACCAGGATTAAAATAAAGCAATGATCCTC
*
2421 AACC---A--AAAATAAAGCAACGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* * *
2446 AACTAGGATTGAAATAAAGCAACGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* *
2476 AACCAGGATTAAAGTAAAGCAATAATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
2506 AACCAGGATTAAAATAAAAGTC-ATGATCCTC
1 AACCAGGATTAAAAT-AAAG-CAATGATCCTC
* * *
2537 AACCAGGATTAAATTGAAGCAAAGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* ** *
2567 AAACAGGATTAAAATGGAGCGATGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* *
2597 AAACAGGATTGAAATAAAGCAATGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* *
2627 AACCAGGATAAAAATAAAGCAATGATCCTA
1 AACCAGGATTAAAATAAAGCAATGATCCTC
*
2657 AACC---A--AAAATAAAGCAACGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* *
2682 AACCAGGATTGAAATAAAGCAACGATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
* *
2712 AACCAGGATTAAAGTAAAGCAATAATCCTC
1 AACCAGGATTAAAATAAAGCAATGATCCTC
2742 AACCAGGATTAAAATAAAAGTC-ATGATCCTC
1 AACCAGGATTAAAAT-AAAG-CAATGATCCTC
* *
2773 AACCAGGATTAAATTGAAGCCAA-GATCCTC
1 AACCAGGATTAAAATAAAG-CAATGATCCTC
* *
2803 AAACAGGATTAAAACAAAGCAAAT-ATCCTC
1 AACCAGGATTAAAATAAAGC-AATGATCCTC
*
2833 AACCAGGATTAAAACAAAGCAAAT-ATCCTC
1 AACCAGGATTAAAATAAAGC-AATGATCCTC
*
2863 AACCAGGATTAAAATAAGGCAAAT-ATCCTC
1 AACCAGGATTAAAATAAAGC-AATGATCCTC
*
2893 AACCAGGATTAAAATAACGCAAT
1 AACCAGGATTAAAATAAAGCAAT
2916 CACGCAATGA
Statistics
Matches: 589, Mismatches: 68, Indels: 37
0.85 0.10 0.05
Matches are distributed among these distances:
25 43 0.07
27 2 0.00
28 2 0.00
29 5 0.01
30 482 0.82
31 53 0.09
32 2 0.00
ACGTcount: A:0.47, C:0.20, G:0.14, T:0.19
Consensus pattern (30 bp):
AACCAGGATTAAAATAAAGCAATGATCCTC
Found at i:2629 original size:236 final size:236
Alignment explanation
Indices: 2211--2897 Score: 1087
Period size: 236 Copynumber: 2.9 Consensus size: 236
2201 AGAGAGAGAG
* * * * * *
2211 AACCAAGATTGAAATGAAGCAATGATCCTCAACCAGGATTAAAATAAAGCAATGATCCTCAAACA
1 AACCAGGATTGAAATAAAGCAACGATCCTCAACCAGGATTAAAGTAAAGCAATAATCCTCAACCA
* * * * *
2276 GGATTGAAAT-GAAG-CAATGATCCTCAACCAGGATTAAAATAAAGCAATGATCCTCAAACAGGA
66 GGATTAAAATAAAAGTC-ATGATCCTCAACCAGGATTAAATTGAAGCAAAGATCCTCAAACAGGA
*
2339 TTAAAATAGAGCGATGATCCTCAAACAGGATTGAAATAAAACAATGATCCTCAACCAGGATAAAA
130 TTAAAATAGAGCGATGATCCTCAAACAGGATTGAAATAAAGCAATGATCCTCAACCAGGATAAAA
2404 ATAAAGCAATGATCCTAAACCAAAAATAAAGCAACGATCCTC
195 ATAAAGCAATGATCCTAAACCAAAAATAAAGCAACGATCCTC
*
2446 AACTAGGATTGAAATAAAGCAACGATCCTCAACCAGGATTAAAGTAAAGCAATAATCCTCAACCA
1 AACCAGGATTGAAATAAAGCAACGATCCTCAACCAGGATTAAAGTAAAGCAATAATCCTCAACCA
2511 GGATTAAAATAAAAGTCATGATCCTCAACCAGGATTAAATTGAAGCAAAGATCCTCAAACAGGAT
66 GGATTAAAATAAAAGTCATGATCCTCAACCAGGATTAAATTGAAGCAAAGATCCTCAAACAGGAT
*
2576 TAAAATGGAGCGATGATCCTCAAACAGGATTGAAATAAAGCAATGATCCTCAACCAGGATAAAAA
131 TAAAATAGAGCGATGATCCTCAAACAGGATTGAAATAAAGCAATGATCCTCAACCAGGATAAAAA
2641 TAAAGCAATGATCCTAAACCAAAAATAAAGCAACGATCCTC
196 TAAAGCAATGATCCTAAACCAAAAATAAAGCAACGATCCTC
2682 AACCAGGATTGAAATAAAGCAACGATCCTCAACCAGGATTAAAGTAAAGCAATAATCCTCAACCA
1 AACCAGGATTGAAATAAAGCAACGATCCTCAACCAGGATTAAAGTAAAGCAATAATCCTCAACCA
*
2747 GGATTAAAATAAAAGTCATGATCCTCAACCAGGATTAAATTGAAGCCAAGATCCTCAAACAGGAT
66 GGATTAAAATAAAAGTCATGATCCTCAACCAGGATTAAATTGAAGCAAAGATCCTCAAACAGGAT
* * * * * * *
2812 TAAAACAAAGCAAAT-ATCCTCAACCAGGATTAAAACAAAGCAAAT-ATCCTCAACCAGGATTAA
131 TAAAATAGAGC-GATGATCCTCAAACAGGATTGAAATAAAGC-AATGATCCTCAACCAGGATAAA
* *
2875 AATAAGGCAAAT-ATCCTCAACCA
194 AATAAAGC-AATGATCCTAAACCA
2898 GGATTAAAAT
Statistics
Matches: 421, Mismatches: 26, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
235 67 0.16
236 345 0.82
237 9 0.02
ACGTcount: A:0.47, C:0.20, G:0.14, T:0.19
Consensus pattern (236 bp):
AACCAGGATTGAAATAAAGCAACGATCCTCAACCAGGATTAAAGTAAAGCAATAATCCTCAACCA
GGATTAAAATAAAAGTCATGATCCTCAACCAGGATTAAATTGAAGCAAAGATCCTCAAACAGGAT
TAAAATAGAGCGATGATCCTCAAACAGGATTGAAATAAAGCAATGATCCTCAACCAGGATAAAAA
TAAAGCAATGATCCTAAACCAAAAATAAAGCAACGATCCTC
Found at i:2938 original size:38 final size:38
Alignment explanation
Indices: 2887--2978 Score: 103
Period size: 38 Copynumber: 2.4 Consensus size: 38
2877 TAAGGCAAAT
* * * *
2887 ATCCTCAACCAGGATTAAAATAACGCAATCACGCAATG
1 ATCCTAAACCAGGATTAAAATAAAGCAATAAAGCAATG
** * * *
2925 ATCCTAAACCAGGATCGACATAAATCGATAAAGCAATG
1 ATCCTAAACCAGGATTAAAATAAAGCAATAAAGCAATG
2963 ATCCTAAACCAGGATT
1 ATCCTAAACCAGGATT
2979 GAAACAAACT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.42, C:0.24, G:0.14, T:0.20
Consensus pattern (38 bp):
ATCCTAAACCAGGATTAAAATAAAGCAATAAAGCAATG
Found at i:2993 original size:38 final size:38
Alignment explanation
Indices: 2919--2995 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 38
2909 ACGCAATCAC
* *
2919 GCAATGATCCTAAACCAGGATCGACATAAATCGATAAA
1 GCAATGATCCTAAACCAGGATCGAAACAAATCGATAAA
*
2957 GCAATGATCCTAAACCAGGATTGAAACAAA-CTGATAAA
1 GCAATGATCCTAAACCAGGATCGAAACAAATC-GATAAA
2995 G
1 G
2996 AAAAATAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 34 0.97
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.18
Consensus pattern (38 bp):
GCAATGATCCTAAACCAGGATCGAAACAAATCGATAAA
Found at i:3357 original size:71 final size:71
Alignment explanation
Indices: 3273--3431 Score: 277
Period size: 69 Copynumber: 2.3 Consensus size: 71
3263 CTCATTAAAC
*
3273 TTGGCTTATGGAAAAGCCTCTATATGGCTTGGATGGAACCAAGGCTTAAACTGACTCGTATGGAA
1 TTGGCTTGTGGAAAAGCCTCTATATGGCTTGGATGGAACCAAGGCTTAAACTGACTCGTATGGAA
3338 ACGAGT
66 ACGAGT
*
3344 TTGGCTTGTGGAAAAG-C-CTATGTGGCTTGGATGGAACCAAGGCTTAAACTGACTCGTATGGAA
1 TTGGCTTGTGGAAAAGCCTCTATATGGCTTGGATGGAACCAAGGCTTAAACTGACTCGTATGGAA
3407 ACGAGT
66 ACGAGT
*
3413 TTTGCTTGTGGAAAAGCCT
1 TTGGCTTGTGGAAAAGCCT
3432 GAGTATTCGG
Statistics
Matches: 83, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
69 66 0.80
70 2 0.02
71 15 0.18
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (71 bp):
TTGGCTTGTGGAAAAGCCTCTATATGGCTTGGATGGAACCAAGGCTTAAACTGACTCGTATGGAA
ACGAGT
Found at i:3631 original size:26 final size:26
Alignment explanation
Indices: 3593--3654 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
3583 GTCAACTGAA
** *
3593 ATAAACTCCAGAAAAGATCGCCCTGG
1 ATAAACTGAAGAAAAGATCACCCTGG
3619 ATAAACTGAAGAAAAGATCACCCTGG
1 ATAAACTGAAGAAAAGATCACCCTGG
*
3645 ATCAACTGAA
1 ATAAACTGAA
3655 ATAAATGGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.44, C:0.23, G:0.18, T:0.16
Consensus pattern (26 bp):
ATAAACTGAAGAAAAGATCACCCTGG
Found at i:3678 original size:35 final size:35
Alignment explanation
Indices: 3619--4219 Score: 433
Period size: 35 Copynumber: 17.0 Consensus size: 35
3609 ATCGCCCTGG
* *
3619 ATAAACTGAAGAAAAGATCACCCTGGATCAACTGAA
1 ATAAATTGAAG-AAAGATCGCCCTGGATCAACTGAA
* * *
3655 ATAAATGGAAGAAAGACCGCCCTGGATCAATTGAA
1 ATAAATTGAAGAAAGATCGCCCTGGATCAACTGAA
* * * * *
3690 ATGAATTGAATAAAAGATCGCTCTAGATCGACTGAA
1 ATAAATTGAA-GAAAGATCGCCCTGGATCAACTGAA
* *
3726 ATAAATTGAATAAAAGATCGCCCTAGATCAACT-AA
1 ATAAATTGAA-GAAAGATCGCCCTGGATCAACTGAA
* * * *
3761 AGTAAATTGAGGAGAGATCACCCTGGATCAACTGAC
1 A-TAAATTGAAGAAAGATCGCCCTGGATCAACTGAA
* * * ** * *
3797 ATAAACTAAATG-AAGATCACCAGGGATCCATTGAA
1 ATAAATTGAA-GAAAGATCGCCCTGGATCAACTGAA
* *
3832 ATAAACTGAAGAAAAGATCGCCCTGGATCAACTGGA
1 ATAAATTGAAG-AAAGATCGCCCTGGATCAACTGAA
* * ***
3868 ATACATTGAAGAAAGACCGCCCTAGG-TCGTTTGAA
1 ATAAATTGAAGAAAGATCGCCCT-GGATCAACTGAA
* * * * *
3903 ATAAATTGACGAAGGACCGCCCTGGGTCAACTAAA
1 ATAAATTGAAGAAAGATCGCCCTGGATCAACTGAA
* * * *
3938 ATAAACTGAATAAAGATCGTCCTGAATCAACTGAA
1 ATAAATTGAAGAAAGATCGCCCTGGATCAACTGAA
* * *
3973 ATAAACTGAATG-AAGACCGCCCTGGGTCAACTGAA
1 ATAAATTGAA-GAAAGATCGCCCTGGATCAACTGAA
** * * * *
4008 AT-ACCTGAA-ATAGGACCACCCTGGGTCAACTGAA
1 ATAAATTGAAGA-AAGATCGCCCTGGATCAACTGAA
* * * *
4042 ATGAATTGAACAAGGATCGCCTTGGATCAAACTGAA
1 ATAAATTGAAGAAAGATCGCCCTGGATC-AACTGAA
* * * * *
4078 ATAAACTGAA-ATAGGACCACCCTGGGTCAACTGAA
1 ATAAATTGAAGA-AAGATCGCCCTGGATCAACTGAA
* * *
4113 ATGAATTGAATAAGGATCGCCCTGGATCAACTGAA
1 ATAAATTGAAGAAAGATCGCCCTGGATCAACTGAA
* * * *
4148 GTGAATTGAAGAAAAGATCACCCTGGATCAATTGAA
1 ATAAATTGAAG-AAAGATCGCCCTGGATCAACTGAA
* * * *
4184 ATAAACTGAATAAAGACCGCCCTGGGTCAACTGAA
1 ATAAATTGAAGAAAGATCGCCCTGGATCAACTGAA
4219 A
1 A
4220 CGAACTGAAG
Statistics
Matches: 449, Mismatches: 99, Indels: 35
0.77 0.17 0.06
Matches are distributed among these distances:
34 32 0.07
35 263 0.59
36 154 0.34
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (35 bp):
ATAAATTGAAGAAAGATCGCCCTGGATCAACTGAA
Found at i:4212 original size:106 final size:106
Alignment explanation
Indices: 3619--4228 Score: 536
Period size: 106 Copynumber: 5.8 Consensus size: 106
3609 ATCGCCCTGG
* * *
3619 ATAAACTGAAGAAAAGATCACCCTGGATCAACTGAAATAAA-TGGAAGAAAGACCGCCCTGGATC
1 ATAAATTGAAGAAAAGATCGCCCTGGATCAACTGAAATAAACT-GAAGAAAGACCGCCCTGGGTC
* * * * * *
3683 AATTGAAATGAATTGAATAAAAGATCGCTCTAGATCGACTGAA
65 AACTGAAATGAACTGAAT-AAGGATCGCCCTGGATCAACTGAA
* * * * * * * *
3726 ATAAATTGAATAAAAGATCGCCCTAGATCAACT-AAAGTAAATTGAGGAGAGATCACCCTGGATC
1 ATAAATTGAAGAAAAGATCGCCCTGGATCAACTGAAA-TAAACTGAAGAAAGACCGCCCTGGGTC
* * * * ** * *
3790 AACTGACATAAACTAAATGAA-GATCACCAGGGATCCATTGAA
65 AACTGAAATGAACTGAAT-AAGGATCGCCCTGGATCAACTGAA
* * * * * *
3832 ATAAACTGAAGAAAAGATCGCCCTGGATCAACTGGAATACATTGAAGAAAGACCGCCCTAGGTCG
1 ATAAATTGAAGAAAAGATCGCCCTGGATCAACTGAAATAAACTGAAGAAAGACCGCCCTGGGTCA
** * * ** * * *
3897 TTTGAAATAAATTGACGAAGGACCGCCCTGGGTCAACTAAA
66 ACTGAAATGAACTGAATAAGGATCGCCCTGGATCAACTGAA
* * * *
3938 ATAAACTGAA-TAAAGATCGTCCTGAATCAACTGAAATAAACTGAATG-AAGACCGCCCTGGGTC
1 ATAAATTGAAGAAAAGATCGCCCTGGATCAACTGAAATAAACTGAA-GAAAGACCGCCCTGGGTC
* * * *
4001 AACTGAAAT-ACCTGAA-ATAGGACCACCCTGGGTCAACTGAA
65 AACTGAAATGAACTGAATA-AGGATCGCCCTGGATCAACTGAA
* * * * * *
4042 ATGAATTGAA-CAAGGATCGCCTTGGATCAAACTGAAATAAACTGAA-ATAGGACCACCCTGGGT
1 ATAAATTGAAGAAAAGATCGCCCTGGATC-AACTGAAATAAACTGAAGA-AAGACCGCCCTGGGT
*
4105 CAACTGAAATGAATTGAATAAGGATCGCCCTGGATCAACTGAA
64 CAACTGAAATGAACTGAATAAGGATCGCCCTGGATCAACTGAA
* * * * *
4148 GTGAATTGAAGAAAAGATCACCCTGGATCAATTGAAATAAACTGAATAAAGACCGCCCTGGGTCA
1 ATAAATTGAAGAAAAGATCGCCCTGGATCAACTGAAATAAACTGAAGAAAGACCGCCCTGGGTCA
*
4213 ACTGAAACGAACTGAA
66 ACTGAAATGAACTGAA
4229 GCATCTGAAA
Statistics
Matches: 403, Mismatches: 87, Indels: 27
0.78 0.17 0.05
Matches are distributed among these distances:
103 1 0.00
104 46 0.11
105 92 0.23
106 180 0.45
107 83 0.21
108 1 0.00
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (106 bp):
ATAAATTGAAGAAAAGATCGCCCTGGATCAACTGAAATAAACTGAAGAAAGACCGCCCTGGGTCA
ACTGAAATGAACTGAATAAGGATCGCCCTGGATCAACTGAA
Found at i:4229 original size:71 final size:70
Alignment explanation
Indices: 3631--4228 Score: 441
Period size: 71 Copynumber: 8.5 Consensus size: 70
3621 AAACTGAAGA
* * * * *
3631 AAAGATCACCCTGGATCAACTGAAATAAA-TGGAAGAAAGACCGCCCTGGATCAATTGAAATGAA
1 AAAGATCGCCCTGGATCAACTGAAATAAACT-GAAAAAAGACCACCCTGGATCAACTGAAATAAA
3695 TTGAAT
65 TTGAAT
* * * * * * *
3701 AAAAGATCGCTCTAGATCGACTGAAATAAATTGAATAAAAGATCGCCCTAGATCAACT-AAAGTA
1 -AAAGATCGCCCTGGATCAACTGAAATAAACTGAA-AAAAGACCACCCTGGATCAACTGAAA-TA
**
3765 AATTGAGG
63 AATTGAAT
* * * * * ** * *
3773 AGAGATCACCCTGGATCAACTGACATAAACT-AAATGAAGATCACCAGGGATCCATTGAAATAAA
1 AAAGATCGCCCTGGATCAACTGAAATAAACTGAAA-AAAGACCACCCTGGATCAACTGAAATAAA
* *
3837 CTGAAGA
65 TTGAA-T
* * * * * ***
3844 AAAGATCGCCCTGGATCAACTGGAATACATTGAAGAAAGACCGCCCTAGG-TCGTTTGAAATAAA
1 AAAGATCGCCCTGGATCAACTGAAATAAACTGAAAAAAGACCACCCT-GGATCAACTGAAATAAA
**
3908 TTGACG
65 TTGAAT
* * * * * * ** * *
3914 AAGGACCGCCCTGGGTCAACTAAAATAAACTGAATAAAGATCGTCCTGAATCAACTGAAATAAAC
1 AAAGATCGCCCTGGATCAACTGAAATAAACTGAAAAAAGACCACCCTGGATCAACTGAAATAAAT
3979 TGAAT
66 TGAAT
* * * * * * * *
3984 GAAGACCGCCCTGGGTCAACTGAAAT-ACCTGAAATAGGACCACCCTGGGTCAACTGAAATGAAT
1 AAAGATCGCCCTGGATCAACTGAAATAAACTGAAAAAAGACCACCCTGGATCAACTGAAATAAAT
*
4048 TGAAC
66 TGAAT
* * * * * *
4053 AAGGATCGCCTTGGATCAAACTGAAATAAACTGAAATAGGACCACCCTGGGTCAACTGAAATGAA
1 AAAGATCGCCCTGGATC-AACTGAAATAAACTGAAAAAAGACCACCCTGGATCAACTGAAATAAA
4118 TTGAAT
65 TTGAAT
* * * * * *
4124 AAGGATCGCCCTGGATCAACTGAAGTGAATTGAAGAAAAGATCACCCTGGATCAATTGAAATAAA
1 AAAGATCGCCCTGGATCAACTGAAATAAACTGAA-AAAAGACCACCCTGGATCAACTGAAATAAA
*
4189 CTGAAT
65 TTGAAT
* * **
4195 AAAGACCGCCCTGGGTCAACTGAAACGAACTGAA
1 AAAGATCGCCCTGGATCAACTGAAATAAACTGAA
4229 GCATCTGAAA
Statistics
Matches: 414, Mismatches: 101, Indels: 24
0.77 0.19 0.04
Matches are distributed among these distances:
69 45 0.11
70 120 0.29
71 219 0.53
72 30 0.07
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.20
Consensus pattern (70 bp):
AAAGATCGCCCTGGATCAACTGAAATAAACTGAAAAAAGACCACCCTGGATCAACTGAAATAAAT
TGAAT
Found at i:8685 original size:16 final size:16
Alignment explanation
Indices: 8660--8690 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8650 TAGATACTTA
8660 TGATGATTTGCATGAC
1 TGATGATTTGCATGAC
*
8676 TGATGCTTTGCATGA
1 TGATGATTTGCATGA
8691 ATGCACTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.39
Consensus pattern (16 bp):
TGATGATTTGCATGAC
Done.