Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013409.1 Corchorus olitorius cultivar O-4 contig13442, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2006
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:1003 original size:21 final size:22

Alignment explanation


    Indices: 979--1031  Score: 74
    Period size: 21  Copynumber: 2.5  Consensus size: 22

        969 TGCCAGACCT

                       *          
        979 CATCCGCGCCATCC-GACCGGC
          1 CATCCGCGCCAGCCTGACCGGC

                            *     
       1000 CATCCGCGCC-GCCTGCCCGGC
          1 CATCCGCGCCAGCCTGACCGGC

                       
       1021 CATCCGCGCCA
          1 CATCCGCGCCA

       1032 CAAGCCCAGC


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  20    2  0.07
  21   26  0.93

ACGTcount: A:0.11, C:0.55, G:0.25, T:0.09


Consensus pattern (22 bp):   
CATCCGCGCCAGCCTGACCGGC

Found at i:1038 original size:21 final size:21

Alignment explanation


    Indices: 995--1047  Score: 70
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        985 CGCCATCCGA

                           * **  
        995 CCGGCCATCCGCGCCGCCTGC
          1 CCGGCCATCCGCGCCACAAGC

                                 
       1016 CCGGCCATCCGCGCCACAAGC
          1 CCGGCCATCCGCGCCACAAGC

              *        
       1037 CCAGCCATCCG
          1 CCGGCCATCCG

       1048 TGCCTTCCTC


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.13, C:0.55, G:0.25, T:0.08


Consensus pattern (21 bp):   
CCGGCCATCCGCGCCACAAGC
Done.