Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013411.1 Corchorus olitorius cultivar O-4 contig13444, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 769

Length: 1282
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38


Found at i:738 original size:33 final size:33

Alignment explanation


    Indices: 672--736  Score: 114
    Period size: 32  Copynumber: 2.0  Consensus size: 33

        662 GACTCTGATG

                               *             
        672 AATATGTAAGTGAAAGGTATTTCTAGTTATTTT
          1 AATATGTAAGTGAAAGGTACTTCTAGTTATTTT

                                             
        705 AATATGTAAGTG-AAGGTACTTCTAGTTATTTT
          1 AATATGTAAGTGAAAGGTACTTCTAGTTATTTT

        737 TACTTGATGT


Statistics
Matches: 31,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  32   19  0.61
  33   12  0.39

ACGTcount: A:0.32, C:0.05, G:0.18, T:0.45


Consensus pattern (33 bp):   
AATATGTAAGTGAAAGGTACTTCTAGTTATTTT
Done.