Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013412.1 Corchorus olitorius cultivar O-4 contig13445, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53450

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1540--1686
60
2.4
60
80
6
152
32
16
14
36
1.89
6530--6564
18
2.0
18
88
5
54
82
0
0
17
0.66
15230--15262
6
5.7
6
85
7
50
39
15
0
45
1.46
18507--18541
16
2.2
16
94
0
61
40
22
17
20
1.92
29480--29559
30
2.6
31
82
7
101
46
10
5
38
1.59
29511--29574
30
2.1
30
82
0
74
53
10
3
32
1.52
30731--30761
11
2.8
11
95
0
53
0
3
19
77
0.90
31615--31646
13
2.5
13
94
0
55
75
9
6
9
1.20
31623--31664
13
3.0
14
86
6
50
64
7
2
26
1.32
31711--31741
12
2.6
12
100
0
62
22
38
38
0
1.54
36936--37057
27
4.5
27
84
2
163
38
25
19
16
1.92
36936--37057
55
2.2
54
92
1
199
38
25
19
16
1.92
38674--38698
13
1.9
13
100
0
50
0
28
24
48
1.52
40955--40984
15
2.0
15
93
0
51
33
10
13
43
1.77
42858--42942
40
2.1
41
84
6
111
38
0
10
50
1.37
51194--51222
2
15.0
2
92
7
51
48
0
0
51
1.00
53406--53441
3
11.7
3
88
5
54
2
27
0
69
1.02

Tables:   1

The End!