Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013413.1 Corchorus olitorius cultivar O-4 contig13446, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6101
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30


Found at i:2224 original size:18 final size:18

Alignment explanation


    Indices: 2201--2235  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2191 GTGAAAGCAC

                      *       
       2201 TAGCATTGGCGTTGGCAT
          1 TAGCATTGGCATTGGCAT

                             
       2219 TAGCATTGGCATTGGCA
          1 TAGCATTGGCATTGGCA

       2236 AAGCCAAACC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.20, C:0.17, G:0.31, T:0.31


Consensus pattern (18 bp):   
TAGCATTGGCATTGGCAT
Done.