Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013416.1 Corchorus olitorius cultivar O-4 contig13449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46164

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
788--824
17
2.2
17
100
0
74
29
5
16
48
1.68
4609--4670
30
2.1
29
90
3
97
25
8
19
46
1.77
6680--6714
17
1.9
19
88
11
56
60
0
2
37
1.12
8301--8349
25
2.0
25
95
0
89
57
10
14
18
1.65
8668--8931
140
1.9
140
93
1
458
55
7
13
23
1.64
12708--12969
107
2.5
106
90
2
395
40
9
9
40
1.69
20295--20468
28
5.7
28
82
14
179
31
17
16
35
1.92
20328--20468
62
2.3
59
93
3
237
31
15
17
35
1.91
24934--25053
40
3.0
40
96
2
215
37
5
19
37
1.76
25720--25786
31
2.2
31
89
5
102
22
17
11
47
1.80
30183--30255
35
2.0
37
94
5
132
43
15
15
26
1.85
30249--30430
92
2.0
92
96
0
337
37
14
14
32
1.88
30473--30572
49
2.1
49
90
5
159
46
8
3
43
1.48
35106--35132
11
2.5
11
100
0
54
55
11
0
33
1.35
42404--42503
22
4.6
22
87
2
139
45
11
6
38
1.64
42404--42503
43
2.3
44
85
1
139
45
11
6
38
1.64
45369--45409
21
1.9
22
85
5
57
43
29
17
9
1.80

Tables:   1

The End!