Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001342.1 Corchorus olitorius cultivar O-4 contig01342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1817
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.34


Found at i:543 original size:19 final size:20

Alignment explanation


    Indices: 519--556  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        509 TGTAGCAATT

                      *         
        519 TTCATA-ATATCATTTTAGA
          1 TTCATACATAACATTTTAGA

                               
        538 TTCATACATAACATTTTAG
          1 TTCATACATAACATTTTAG

        557 TTCTATTCAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  19    6  0.35
  20   11  0.65

ACGTcount: A:0.37, C:0.13, G:0.05, T:0.45


Consensus pattern (20 bp):   
TTCATACATAACATTTTAGA

Done.