Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013422.1 Corchorus olitorius cultivar O-4 contig13455, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43090

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2004--2096
45
2.1
45
89
0
141
35
3
23
37
1.71
5762--5858
22
4.6
21
81
7
81
37
8
10
44
1.69
5762--5840
22
3.6
22
81
6
90
36
7
8
46
1.64
7670--7706
19
1.9
19
88
0
56
56
8
8
27
1.56
8151--8195
22
2.0
22
91
0
72
22
24
24
28
1.99
19666--19835
58
2.9
58
87
5
229
39
23
21
15
1.92
19568--19817
29
8.6
29
77
3
189
39
22
20
17
1.92
19682--19835
29
5.3
29
79
1
148
40
23
20
14
1.90
20065--20639
59
9.7
59
91
2
888
42
15
16
25
1.87
21475--21588
36
3.1
36
87
3
158
9
21
12
56
1.64
36246--36289
21
2.1
21
87
8
63
25
2
9
63
1.35
40898--40982
33
2.5
34
86
1
118
23
27
14
35
1.93
40864--41079
99
2.2
96
82
3
243
24
27
13
34
1.93
40946--41083
65
2.1
65
89
2
206
25
25
13
36
1.92
40898--41047
33
4.5
33
71
9
99
26
25
13
34
1.93
40866--41083
32
6.7
33
73
9
153
24
27
13
33
1.93
41044--41144
53
1.9
52
91
2
166
23
22
11
41
1.87
41158--43085
154
12.5
153
91
1
3045
41
18
19
20
1.90
41158--43085
307
6.3
307
92
1
3080
41
18
19
20
1.90

Tables:   1

The End!