Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013423.1 Corchorus olitorius cultivar O-4 contig13456, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31182

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3828--3936
36
2.9
37
84
2
148
54
14
22
8
1.67
3828--3950
38
3.3
36
79
6
131
56
13
20
8
1.64
4768--5275
59
8.8
58
85
2
682
24
17
16
41
1.89
4780--5268
171
2.8
172
85
4
667
24
17
16
41
1.89
5521--5772
29
8.7
29
78
7
235
17
17
25
38
1.92
5521--5758
58
4.1
58
82
4
264
17
18
26
37
1.93
16459--16490
12
2.7
12
100
0
64
46
0
18
34
1.49
21446--21926
248
1.9
248
96
0
881
38
12
20
28
1.90
23599--23727
45
2.8
45
97
1
240
39
20
5
34
1.76
24922--24976
27
2.0
27
100
0
110
18
14
16
50
1.77
30562--30610
21
2.4
20
83
6
62
48
8
18
24
1.75
30707--30779
27
2.6
28
82
6
96
41
28
15
15
1.87
31020--31182
52
3.2
51
84
5
213
25
25
12
35
1.92
31044--31182
50
2.7
50
91
2
224
26
25
13
33
1.93

Tables:   1

The End!