Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013425.1 Corchorus olitorius cultivar O-4 contig13458, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24864
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33


Found at i:11189 original size:19 final size:18

Alignment explanation


    Indices: 11152--11191  Score: 53
    Period size: 19  Copynumber: 2.2  Consensus size: 18

      11142 TCCTTGAAAT

                        *     
      11152 AATTCTTCAATGGTCTTC
          1 AATTCTTCAATGATCTTC

                        *      
      11170 AATTCTTCAAATTATCTTC
          1 AATTCTTC-AATGATCTTC

               
      11189 AAT
          1 AAT

      11192 AAATCTTTAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  18    8  0.42
  19   11  0.58

ACGTcount: A:0.30, C:0.20, G:0.05, T:0.45


Consensus pattern (18 bp):   
AATTCTTCAATGATCTTC

Found at i:19034 original size:24 final size:24

Alignment explanation


    Indices: 19002--19067  Score: 78
    Period size: 24  Copynumber: 2.8  Consensus size: 24

      18992 ACCACGTTAC

                                *   
      19002 ACCCATTGTGACAGTTACATGACT
          1 ACCCATTGTGACAGTTACATCACT

                     *       **     
      19026 ACCCATTGTAACAGTTAGGTCACT
          1 ACCCATTGTGACAGTTACATCACT

              *  *            
      19050 ACTCACTGTGACAGTTAC
          1 ACCCATTGTGACAGTTAC

      19068 GACACTGTTA


Statistics
Matches: 34,  Mismatches: 8, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  24   34  1.00

ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29


Consensus pattern (24 bp):   
ACCCATTGTGACAGTTACATCACT

Done.