Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013426.1 Corchorus olitorius cultivar O-4 contig13459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51268

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5997--6031
2
17.5
2
100
0
70
51
0
48
0
1.00
7679--7710
4
8.0
4
100
0
64
75
0
0
25
0.81
11020--11077
18
3.2
18
70
4
53
18
3
18
58
1.53
11359--11393
18
2.1
17
89
10
54
42
0
11
45
1.40
14566--14613
23
2.1
23
100
0
96
52
12
4
31
1.58
15719--15811
30
3.1
30
84
0
123
17
27
22
32
1.96
18831--18873
3
14.3
3
95
0
77
30
0
0
69
0.88
20062--20215
22
7.0
23
75
10
99
39
8
12
39
1.73
20064--20214
44
3.4
44
80
5
119
39
8
11
40
1.73
20056--20194
66
2.1
65
79
10
149
38
8
12
39
1.75
22033--22065
16
2.1
16
88
11
50
48
6
12
33
1.65
30731--30776
22
2.1
22
100
0
92
47
4
4
43
1.42
30803--30848
21
2.2
21
100
0
92
41
4
19
34
1.71
31282--32236
439
2.2
437
86
2
1310
42
16
13
26
1.86
34881--34990
21
5.2
21
85
0
139
24
11
22
40
1.87
47059--47111
2
27.5
2
88
7
83
0
52
0
47
1.00

Tables:   1

The End!