Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013428.1 Corchorus olitorius cultivar O-4 contig13461, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7946
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30


Found at i:6220 original size:44 final size:44

Alignment explanation


    Indices: 6157--6240  Score: 159
    Period size: 44  Copynumber: 1.9  Consensus size: 44

       6147 CCAATTGAAA

                                                        
       6157 TATAATAATAAATTGCTTGTTTTTGTCATAGTTTAGTACACTGG
          1 TATAATAATAAATTGCTTGTTTTTGTCATAGTTTAGTACACTGG

                                         *          
       6201 TATAATAATAAATTGCTTGTTTTTGTCATCGTTTAGTACA
          1 TATAATAATAAATTGCTTGTTTTTGTCATAGTTTAGTACA

       6241 GTCAGCCTTG


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  44   39  1.00

ACGTcount: A:0.30, C:0.10, G:0.14, T:0.46


Consensus pattern (44 bp):   
TATAATAATAAATTGCTTGTTTTTGTCATAGTTTAGTACACTGG
Done.