Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013429.1 Corchorus olitorius cultivar O-4 contig13462, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69517

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1299--1338
10
3.7
10
81
18
53
10
0
40
50
1.36
1299--1346
23
2.1
23
92
0
78
16
0
33
50
1.46
4080--4116
2
19.0
2
94
5
67
48
0
0
51
1.00
4243--4295
24
2.2
24
93
0
88
50
16
7
24
1.71
10087--10132
23
2.0
23
87
8
67
17
28
6
47
1.72
13355--13430
2
38.0
2
91
0
125
46
0
3
50
1.20
13359--13429
18
3.9
18
100
0
142
45
0
4
50
1.21
15812--15879
33
2.1
33
94
0
118
17
30
4
47
1.68
15912--16010
33
3.0
33
98
0
189
29
21
21
28
1.98
16015--16075
29
2.1
29
81
0
68
32
16
14
36
1.89
16766--16799
17
2.0
17
94
0
59
38
8
23
29
1.85
17462--17531
35
2.0
35
85
0
95
34
17
20
28
1.95
21429--21812
191
2.0
191
98
0
741
33
13
22
30
1.92
29530--29591
30
2.1
30
100
0
124
38
9
20
30
1.85
30780--30812
2
16.5
2
100
0
66
48
0
0
51
1.00
31369--31692
43
7.7
41
79
9
323
39
27
11
22
1.88
31369--31695
84
3.9
83
89
5
462
39
26
11
22
1.88
31369--31695
168
1.9
169
90
4
518
39
26
11
22
1.88
33897--33967
33
2.1
35
92
5
119
57
0
8
33
1.29
34125--34286
85
1.9
85
89
2
254
50
2
11
36
1.51
35901--35926
2
13.0
2
100
0
52
50
0
0
50
1.00
44732--44763
3
10.7
3
100
0
64
0
31
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45606--45642
13
2.8
13
87
0
56
18
40
8
32
1.80
66184--66371
72
2.6
74
83
10
246
38
12
26
22
1.89
69450--69498
22
2.2
23
92
7
84
48
2
2
46
1.25

Tables:   1

The End!