Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013431.1 Corchorus olitorius cultivar O-4 contig13464, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4721
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27


Found at i:3553 original size:22 final size:22

Alignment explanation


    Indices: 3527--3578  Score: 63
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       3517 GGTGAACGGG

                                   
       3527 AAAGGGAAAGAAAGAA-AAGAGA
          1 AAAGGGAAAGAAAGAAGAAG-GA

                        *         
       3549 AAAGGG-AAGAAGGAAGAAGGA
          1 AAAGGGAAAGAAAGAAGAAGGA

                     
       3570 AGAAGGGAA
          1 A-AAGGGAA

       3579 TGGATAAGGT


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  21   11  0.42
  22   14  0.54
  23    1  0.04

ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00


Consensus pattern (22 bp):   
AAAGGGAAAGAAAGAAGAAGGA
Done.